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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3183 and GFF3184 are separated by 262 nucleotides
GFF3184 and GFF3185 are separated by 170 nucleotides
GFF3185 and GFF3186 are separated by 80 nucleotides
GFF3186 and GFF3187 are separated by 85 nucleotides
GFF3183 - FIG01046167: hypothetical protein, at 189,422 to 189,577
GFF3183
GFF3184 - Putrescine aminotransferase (EC 2.6.1.82), at 189,840 to 191,219
GFF3184
GFF3185 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 191,390 to 193,408
GFF3185
GFF3186 - 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-), at 193,489 to 194,625
GFF3186
GFF3187 - COG1451: Predicted metal-dependent hydrolase, at 194,711 to 195,208
GFF3187
Group
Condition
GFF3183
GFF3184
GFF3185
GFF3186
GFF3187
phage
6F2_phage 15 MOI
-0.7
+0.1
-0.3
+0.1
-0.3
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
-0.5
-0.3
-0.3
+0.1
-0.0
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
+0.1
-0.4
-0.1
-0.3
-0.4
phage
Br60_phage 15 MOI
-1.0
+0.2
-0.0
-0.1
-0.0
phage
phi19h1_phage 15 MOI
-1.1
+0.0
+0.0
-0.0
+0.1
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
-1.4
-0.0
+0.2
+0.2
+0.3
phage
LB_plus_SM_buffer with Ffm_phage 15 MOI
-0.7
+0.0
-0.1
+0.1
+0.1
phage
LB_plus_SM_buffer with phi19h1_phage 15 MOI
-0.9
+0.1
-0.1
+0.0
+0.2
phage
LB_plus_SM_buffer with Br60_phage 0.00005 MOI
-0.8
-0.1
+0.1
+0.0
+0.3
phage
LB_plus_SM_buffer with 6F2_phage 1.875 MOI
-0.5
-0.2
-0.1
-0.1
+0.4
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
-0.7
+0.2
+0.1
-0.2
+0.2
phage
LB_plus_SM_buffer with Ffm_phage 0.001875 MOI
-0.8
+0.2
-0.0
-0.1
+0.2
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
-0.3
-0.2
+0.1
-0.2
+0.2
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
-0.7
-0.0
+0.1
+0.4
+0.2
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-0.6
+0.1
+0.1
+0.2
+0.1
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-0.7
-0.1
+0.1
+0.3
+0.3
phage
Ffm_phage 10 MOI; agar plate assay
-0.3
+0.2
-0.1
-0.2
+0.5
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
+0.3
-0.1
-0.0
-0.4
+0.6
phage
LB_plus_SM_buffer with P22_phage 15 MOI
+0.5
-0.4
-0.1
+0.2
+0.3
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
-1.0
+0.3
+0.3
+0.5
+0.4
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
+0.5
+0.3
-0.2
+0.0
-0.1
phage
LB_plus_SM_buffer with phi19h1_phage 0.1875 MOI
+0.6
-0.1
+0.0
+0.2
+0.2
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.5
+0.2
+0.6
+0.3
+0.2
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
+0.7
-0.2
+0.1
+0.3
-0.0
micoeukaryotes
Acanthamoeba sp., muxed culture-2
+0.8
-0.0
-0.0
+0.0
+0.2
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.5
+0.5
+0.5
+0.4
+0.1
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
+0.3
+0.6
+0.5
-0.1
-0.3
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+0.2
+0.1
+0.4
+0.4
+0.3
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.6
+0.3
+0.7
+0.5
+0.4
phage
6H2_phage 10 MOI; agar plate assay
+1.5
-0.0
+0.2
+0.0
+0.2
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