Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16270	PS417_16275	PS417_16285	PS417_16290	PS417_16295
soil	soil sample 3; outgrowth in LB	+0.1	-2.5	-0.4	-0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-1.0	+0.1	-0.2	-0.3
phage	P. simiae Grant Run MOI 0.1	-0.5	-0.8	-0.1	+0.2	-0.5
phage	P. simiae Grant Run MOI 10	-0.3	-0.4	+0.2	-0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	-1.2	-0.1	+0.1	-0.2
phage	Wcs_1	-0.9	-0.9	+0.3	+0.2	+0.3
phage	JP1 MOI 1	+0.2	-1.2	+0.2	+0.3	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	-0.7	-0.4	-0.3	+0.6
seeds	Growth on radish seeds for 72 hours	-0.4	-0.6	+0.1	-0.2	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-0.6	-0.1	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	-0.6	-0.2	+0.2	-0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-0.3	-0.6	+0.2	+0.1	+0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	-0.6	+0.3	-0.3	+0.7
phage	P. simiae OR1 MOI 0.1	-0.4	+0.2	-0.5	+0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+1.5	-0.3	-0.1	-0.3
soil	soil sample 4; outgrowth in LB	+0.5	+0.7	-0.0	-0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.9	-0.2	-0.7	-0.1
phage	JP1 MOI 0.1	-0.6	-0.7	+0.8	+0.2	+0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.0	+0.4	+0.2	-0.3	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	-0.5	+0.4	-0.3	+0.5
stress	Gentamicin 0.008 mg/ml	+0.6	+0.9	-0.2	-0.2	-0.2
nitrogen source	Cytidine (N)	+0.7	-0.6	-0.0	+0.1	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.3	-0.5	+0.4	+0.9
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.7	+1.2	-0.0	-0.4	+0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	+1.2	+0.5	+0.3	-0.4	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	+0.7	+0.6	-0.2	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	+1.0	+0.1	-0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.1	-0.3	+0.2	+0.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.8	-0.0	-0.2	+0.9	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+1.4	+0.0	+0.1	+0.8