Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_01610 and PS417_01615 are separated by 1 nucleotidesPS417_01615 and PS417_01620 are separated by 41 nucleotidesPS417_01620 and PS417_01625 are separated by 119 nucleotidesPS417_01625 and PS417_01630 overlap by 2 nucleotides PS417_01610: PS417_01610 - sulfurtransferase, at 355,432 to 355,845 _01610 PS417_01615: PS417_01615 - glutaredoxin, at 355,847 to 356,101 _01615 PS417_01620: PS417_01620 - preprotein translocase subunit SecB, at 356,143 to 356,622 _01620 PS417_01625: PS417_01625 - rRNA methylase, at 356,742 to 357,197 _01625 PS417_01630: PS417_01630 - hypothetical protein, at 357,196 to 357,636 _01630
Group Condition PS417_01610 PS417_01615 PS417_01620 PS417_01625 PS417_01630
soil soil sample 3; outgrowth in LB N.D. N.D. -2.2 N.D. -2.4
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. -4.5 N.D. +0.3
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. N.D. -3.0 N.D. -0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -3.4 N.D. +0.4
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. -0.8 N.D. -1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.3 N.D. -2.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -2.0 N.D. -0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -1.3 N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.7 N.D. -0.7
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB N.D. N.D. -0.9 N.D. -1.4
soil soil sample 5; outgrowth in LB N.D. N.D. -3.5 N.D. +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -1.5 N.D. -0.9
stress NaCl stress 250 mM N.D. N.D. -2.0 N.D. -0.3
phage P. simiae OR1 MOI 0.1 N.D. N.D. -1.3 N.D. -1.0
stress Cisplatin 0.01 mg/ml N.D. N.D. -0.8 N.D. -1.4
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. -3.0 N.D. +0.8
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. -2.2 N.D. +0.6
root root sample 6; outgrowth in LB N.D. N.D. -2.6 N.D. +1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.4 N.D. +0.8
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. N.D. -1.8 N.D. +1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -1.6 N.D. +2.0
soil soil sample 8; outgrowth in LB N.D. N.D. -0.9 N.D. +1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -1.3 N.D. +2.0
stress Phosphomycin 0.003 mg/ml N.D. N.D. -0.9 N.D. +1.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. -1.0 N.D. +1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.9 N.D. +1.8
stress LB_noSalt with Chloride 500 mM N.D. N.D. -0.7 N.D. +1.8
carbon source D-Glucose-6-Phosphate (C) N.D. N.D. +2.8 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.8 N.D. +5.2
carbon source D-Glucose-6-Phosphate (C) N.D. N.D. +4.5 N.D. +0.7
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