Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16250	PS417_16255	PS417_16260	PS417_16265	PS417_16270
carbon source	L-Valine (C)	N.D.	-1.3	+0.1	-0.6	-0.1
phage	JP1 MOI 0.1	N.D.	-0.6	+0.1	-0.4	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.8	-0.1	-0.4	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.3	+0.3	-0.4	-0.6
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	N.D.	-1.1	-0.1	+0.0	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-0.9	-0.1	+0.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-0.1	-0.5	-0.8
phage	Wcs_1	N.D.	+0.6	+0.3	-0.6	-0.9
phage	P. simiae OR Antrim MOI 1	N.D.	-1.2	+0.2	+0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-0.1	-0.8	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.7	+0.1	-0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.6	+0.1	-0.6	-0.2
stress	Gentamicin 0.008 mg/ml	N.D.	+0.2	-0.0	-0.8	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.4	+0.3	-0.5	+0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-0.6	+0.4	-0.1	+1.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.5	-0.3	+0.6
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	-0.3	+0.5	-0.4	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.4	+0.2	+0.6	+0.7
soil	soil sample 8; outgrowth in LB	N.D.	+0.3	+0.3	-0.4	+0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	-0.1	-0.2	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.3	+0.1	+0.5	+0.9
root	root sample 6; outgrowth in LB	N.D.	-0.3	+0.8	-0.2	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.1	+0.0	-0.0	+0.3
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	N.D.	+1.2	+0.2	-0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.4	+0.4	+0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+1.5	+0.0	+0.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.8	+0.7	+0.0	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.6	+0.6	-0.0	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+1.7	+0.0	-0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.9	+0.1	+0.1	+1.1