Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16235	PS417_16240	PS417_16245	PS417_16250	PS417_16255
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.2	-1.0	-0.2	N.D.	-0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.0	-0.3	-0.6	N.D.	-0.8
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.4	-0.0	-0.6	N.D.	-0.6
phage	JP1 MOI 10	-0.2	-0.5	-0.4	N.D.	-0.4
supernatant control	Vogels_fungal_media 0.1X	-0.4	-0.4	+0.0	N.D.	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.3	+0.0	N.D.	-0.8
carbon source	L-Valine (C)	+0.1	-1.1	-0.1	N.D.	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	+0.1	-0.8	N.D.	-0.5
soil	soil sample 8; outgrowth in LB	-0.2	-0.7	-0.4	N.D.	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	+0.6	-1.2	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.1	+0.1	N.D.	-0.1
phage	P. simiae OR Antrim MOI 1	+0.2	+0.1	+0.3	N.D.	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.6	-0.3	N.D.	+0.6
seeds	Growth on radish seeds for 72 hours	+0.1	-0.9	+0.2	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-0.5	-0.4	N.D.	+0.4
stress	methylglyoxal 0.032 vol%	-0.6	+0.3	+0.4	N.D.	-0.3
carbon source	L-Valine (C)	+0.2	+0.7	+0.6	N.D.	-1.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-0.3	+0.8	N.D.	+0.1
solid stress	Fraxetin 3 mM; solid stress	+0.1	-0.6	+0.5	N.D.	+0.4
carbon source	RCH2_defined_glucose with MS_media 1x	+0.3	+0.3	-0.4	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.4	+0.2	N.D.	+0.8
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.4	+0.4	-0.2	N.D.	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.4	-0.3	N.D.	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	-0.0	-0.2	N.D.	+1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	+0.6	+0.5	N.D.	-0.6
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.2	+0.2	-0.2	N.D.	+1.2
stress	Cobalt chloride 0.16 mM	-0.0	+1.2	+0.2	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+1.6	-0.2	N.D.	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.1	+0.6	N.D.	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.4	-0.0	N.D.	+1.7