Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16205	PS417_16210	PS417_16215	PS417_16220	PS417_16225
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	+0.0	-0.1	N.D.	-0.4
stress	methylglyoxal 0.032 vol%	-0.7	-0.3	+0.1	N.D.	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-0.4	-0.3	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.6	-0.1	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.5	+0.2	N.D.	-0.4
phage	JP1 MOI 1	-0.4	+0.4	-0.3	N.D.	-0.5
phage	P. simiae Grant Run MOI 10	-0.6	+0.1	+0.3	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.3	-0.2	N.D.	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.3	-0.1	N.D.	+0.3
no phage control	Time6-nophage	+0.7	-0.2	-0.6	N.D.	+0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.1	+0.1	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	+0.2	+0.3	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.2	-0.5	N.D.	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.7	-0.1	-0.1	N.D.	-0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.4	-0.4	-0.0	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.5	-0.5	N.D.	+0.3
motility	inner cut, LB soft agar motility assay	-0.4	+0.2	+0.3	N.D.	+0.3
no phage control	no phage control	+0.6	+0.3	-0.0	N.D.	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.3	-0.4	N.D.	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.2	-0.2	N.D.	+0.4
phage	P. simiae OR Antrim MOI 0.1	+0.4	+0.3	-0.2	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	+0.1	+0.2	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.2	-0.2	N.D.	+0.4
supernatant control	Vogels_fungal_media; pH 5.5	+0.3	+0.3	-0.2	N.D.	+0.4
seeds	Growth on radish seeds for 72 hours	+0.6	+0.2	+0.3	N.D.	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	+0.4	+0.5	N.D.	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.1	+0.3	N.D.	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.6	+0.3	+0.2	N.D.	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.4	+0.1	+0.0	N.D.	+0.2
seeds	Growth on radish seeds for 72 hours	+1.2	+0.2	+0.4	N.D.	+0.5