Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16180	PS417_16185	PS417_16190	PS417_16195	PS417_16200
seeds	Growth on radish seeds for 72 hours	-0.1	-0.6	+0.3	-2.9	-0.3
carbon source	L-Valine (C)	-1.2	+0.2	-0.1	-2.3	+0.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.5	-0.2	-0.5	-1.6	-0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.8	-0.1	-0.1	-2.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.9	+0.1	-0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.8	+0.4	-1.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-0.2	-0.0	-2.3	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	-0.0	-0.0	-2.2	+0.2
phage	Wcs_1	+0.1	-0.0	-0.4	-2.1	-0.0
motility	outer cut, LB soft agar motility assay	+0.2	-1.0	+0.2	-1.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.9	+0.1	-1.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-1.2	+0.6	-0.8	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-1.3	+0.6	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-0.6	+0.5	-1.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.3	-0.4	-1.9	-0.2
seeds	Growth on radish seeds for 72 hours	+0.4	+0.4	-0.2	-1.8	+0.1
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.3	+0.5	+0.1	-1.8	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.5	+0.0	+0.6	+1.1	-0.1
phage	JP1 MOI 0.1	+0.5	+0.6	+0.1	-2.1	+0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.2	+0.4	+0.4	-1.5	-0.0
carbon source	L-Valine (C)	-0.1	+0.8	+0.2	-1.4	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+1.8	+0.3	-1.5	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.9	+0.1	+1.3	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.2	+0.1	-0.0	+2.2	-0.1
phage	P. simiae OR Antrim MOI 10	+0.7	-0.9	-0.3	+1.7	-0.1
phage	P. simiae Grant Run MOI 0.1	+0.9	+0.1	-0.6	+0.9	-0.1
phage	P. simiae Grant Run MOI 0.1	+0.4	-0.5	-0.2	+1.4	+0.2
soil	soil sample 4; outgrowth in LB	-0.9	+0.4	+0.7	+1.2	-0.0
phage	P. simiae ORA MOI 10	+0.4	-0.5	+0.3	+1.5	+0.1
phage	P. simiae Grant Run MOI 10	+0.0	-0.6	+0.2	+2.5	+0.1