Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16145	PS417_16150	PS417_16155	PS417_16160	PS417_16165
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	N.D.	-0.0	-1.9	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	N.D.	+0.2	-1.7	+0.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.0	N.D.	-0.4	+1.8	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	N.D.	-0.4	+1.7	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	N.D.	-0.5	+1.4	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	N.D.	-0.2	+1.4	+0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	N.D.	-0.6	+1.9	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	N.D.	-0.2	+1.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.0	N.D.	+0.1	+2.1	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	N.D.	-0.0	+2.3	-0.3
soil	soil sample 7; outgrowth in LB	+0.2	N.D.	-0.6	+2.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	N.D.	-0.1	+2.5	-0.3
stress	Gentamicin 0.008 mg/ml	+0.2	N.D.	-0.1	+1.6	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	N.D.	+0.5	+1.3	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	N.D.	-0.2	+2.6	+0.0
soil	soil sample 6; outgrowth in LB	+0.6	N.D.	-0.4	+2.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	N.D.	+0.0	+2.6	+0.1
soil	soil sample 2; outgrowth in LB	+0.5	N.D.	+0.2	+2.1	+0.1
soil	soil sample 8; outgrowth in LB	+0.8	N.D.	+0.2	+2.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	N.D.	+0.1	+2.6	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	+1.1	N.D.	-0.5	+2.8	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	N.D.	+0.1	+2.7	+0.0
soil	soil sample 5; outgrowth in LB	+0.6	N.D.	+0.3	+2.4	-0.1
soil	soil sample 4; outgrowth in LB	+0.9	N.D.	-0.2	+2.7	-0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	N.D.	+0.4	+2.8	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	N.D.	+0.3	+2.7	+0.2
soil	soil sample 3; outgrowth in LB	+0.3	N.D.	-0.2	+3.8	+0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.0	N.D.	-0.7	+3.8	+0.4
root	root sample 6; outgrowth in LB	+0.8	N.D.	-0.4	+4.1	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.7	N.D.	-0.2	+3.8	+0.6