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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3152 and GFF3153 overlap by 4 nucleotides
GFF3153 and GFF3154 are separated by 188 nucleotides
GFF3154 and GFF3155 are separated by 77 nucleotides
GFF3155 and GFF3156 are separated by 13 nucleotides
GFF3152 - hypothetical protein, at 587,719 to 589,104
GFF3152
GFF3153 - Two-component transcriptional response regulator, LuxR family, at 589,101 to 589,757
GFF3153
GFF3154 - no description, at 589,946 to 591,103
GFF3154
GFF3155 - Gluconolactonase (EC 3.1.1.17), at 591,181 to 592,110
GFF3155
GFF3156 - FIG00441737: hypothetical protein, at 592,124 to 593,281
GFF3156
Group
Condition
GFF3152
GFF3153
GFF3154
GFF3155
GFF3156
complex community
Community=guar; Passage=4
-3.4
+0.5
-0.1
-0.1
-1.2
complex community
Community=Locust bean gum; Passage=4
-3.9
+0.2
+0.0
-0.2
-0.1
complex community
Community=guar; Passage=4
-3.6
-0.2
+0.6
-0.5
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-1.8
-0.5
-0.3
-0.2
-0.3
vitamin
M9 with Supernatant from Cyptococcus
-1.8
-0.7
-0.2
-0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.7
-0.6
-0.2
-0.2
-0.2
complex community
Community=guar; Passage=4
-2.9
-0.2
+0.5
-0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.3
-0.6
-0.3
-0.2
-0.2
complex community
Community=arabino-guar; Passage=4
-3.7
+0.7
+0.2
+0.4
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.9
-0.3
-0.5
-0.4
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.4
-0.3
-0.1
-0.1
-0.4
complex community
Community=Locust bean gum; Passage=4
-2.2
-0.0
-0.3
+0.0
+0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-1.0
-0.8
-0.1
-0.1
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-1.1
-0.1
-0.2
-0.4
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.5
-0.6
-0.3
-0.2
-0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.6
-0.4
-0.4
-0.4
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.1
-0.6
-0.2
+0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.6
-0.5
-0.3
-0.3
-0.3
phage
phage_bap4
-1.3
+0.2
-0.6
-0.0
-0.1
no phage control
no phage control
-1.3
-0.1
-0.3
+0.1
-0.2
phage
phage_bap4
-1.5
-0.1
-0.1
+0.3
-0.3
no phage control
no phage control
-1.7
+0.1
+0.1
-0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.0
+0.2
+0.0
-0.3
-0.3
complex community
Community=guar; Passage=4
-1.5
+0.5
+0.1
-0.3
-0.2
vitamin
M9 with Supernatant from Cyptococcus
-1.1
+0.2
-0.3
+0.3
-0.4
complex community
Community=Kojac gum; Passage=4
-1.7
+0.4
+0.5
-0.4
-0.1
complex community
Community=arabino-guar; Passage=4
-1.3
+0.2
+0.5
-0.0
-0.4
complex community
Community=arabino-guar; Passage=4
-1.4
+0.2
+0.8
+0.2
-0.7
complex community
Community=arabino-guar; Passage=4
-1.4
+0.3
+0.8
-0.8
+0.1
complex community
Community=Locust bean gum; Passage=4
-2.5
+1.0
+0.8
+0.3
-0.6
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