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Gene
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Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3148 and GFF3149 overlap by 4 nucleotides
GFF3149 and GFF3150 are separated by 101 nucleotides
GFF3150 and GFF3151 are separated by 82 nucleotides
GFF3151 and GFF3152 are separated by 27 nucleotides
GFF3148 - no description, at 581,990 to 583,102
GFF3148
GFF3149 - RND efflux system, inner membrane transporter, at 583,099 to 586,152
GFF3149
GFF3150 - Transcriptional regulator, AsnC family, at 586,254 to 586,784
GFF3150
GFF3151 - no description, at 586,867 to 587,691
GFF3151
GFF3152 - hypothetical protein, at 587,719 to 589,104
GFF3152
Group
Condition
GFF3148
GFF3149
GFF3150
GFF3151
GFF3152
complex community
Community=guar; Passage=4
-0.5
+0.4
-0.9
-0.1
-3.6
complex community
Community=guar; Passage=4
-0.2
-0.0
-0.5
-0.5
-2.9
complex community
Community=Kojac gum; Passage=4
-0.7
-0.3
-0.6
-0.2
-1.7
complex community
Community=arabino-guar; Passage=4
-2.0
-0.1
-0.5
+0.4
-1.3
complex community
Community=Locust bean gum; Passage=4
-0.4
+0.1
-0.6
-0.2
-2.2
complex community
Community=arabino-guar; Passage=4
-0.4
-0.2
+0.9
+0.1
-3.7
complex community
Community=Locust bean gum; Passage=4
+0.4
-0.2
+0.2
+0.5
-3.9
complex community
Community=guar; Passage=4
+0.2
-0.2
-0.6
-0.8
-1.5
complex community
Community=guar; Passage=4
-0.0
+0.1
+0.3
+0.4
-3.4
complex community
Community=Locust bean gum; Passage=4
-0.6
+0.1
+0.6
+0.0
-2.5
vitamin
M9 with Supernatant from Cyptococcus
-0.0
-0.3
+0.0
-0.0
-1.8
phage
phage_bap4
-0.6
-0.0
-0.2
-0.0
-1.3
complex community
Community=arabino-guar; Passage=4
+0.2
-0.3
-0.6
-0.0
-1.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
-0.3
+0.3
-0.0
-1.7
phage
phage_bap4
-0.2
-0.1
-0.0
-0.1
-1.5
no phage control
no phage control
-0.1
+0.0
+0.0
-0.1
-1.7
vitamin
M9 with Supernatant from Cyptococcus
+0.3
-0.3
+0.1
-0.2
-1.8
vitamin
M9 with Supernatant from Cyptococcus
-0.3
-0.1
+0.5
-0.5
-1.2
complex community
Community=Locust bean gum; Passage=4
-1.0
-0.1
-0.3
+0.3
-0.3
no phage control
no phage control
-0.2
-0.0
+0.2
-0.0
-1.3
complex community
Community=arabino-guar; Passage=4
+0.5
+0.5
-0.7
-0.2
-1.4
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.1
+0.2
+0.2
-1.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
-0.3
+0.3
+0.0
-1.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
-0.3
+0.4
-0.0
-1.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
-0.3
+0.5
-0.1
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.1
+0.4
-0.5
-0.7
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.5
-0.1
+0.1
-0.1
-1.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
-0.3
+0.8
+0.2
-1.0
no phage control
no phage control
+0.3
-0.3
+0.2
+0.2
-0.9
complex community
Community=Kojac gum; Passage=1
+0.4
-0.0
+0.1
+0.3
-0.9
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