Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16085	PS417_16090	PS417_16095	PS417_16100	PS417_16105
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	N.D.	-1.7	+0.1	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	N.D.	-0.9	-0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	-0.3	-0.8	-0.3
liquid stress	Fraxetin 2 mM; liquid stress	+0.1	N.D.	-0.5	-0.5	-0.7
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.8	N.D.	-0.3	-0.5	+0.1
carbon source	L-Valine (C)	+0.5	N.D.	-1.0	+0.2	-0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	N.D.	-0.2	-0.7	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	N.D.	-0.2	+0.5	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	-0.7	+0.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	N.D.	-0.7	+0.5	-0.5
soil	soil sample 5; outgrowth in LB	-0.8	N.D.	+0.4	+0.4	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	N.D.	+0.8	-1.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.8	N.D.	+0.6	-0.3	+0.1
phage	JP1 MOI 10	-0.6	N.D.	+0.2	+0.6	-0.6
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.6	N.D.	+0.2	-0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	N.D.	+0.5	+0.4	-1.1
motility	inner cut, LB soft agar motility assay	-0.2	N.D.	+0.3	+0.6	-0.8
carbon source	L-Leucine (C)	+0.5	N.D.	-0.1	-0.8	+0.4
phage	JP1 MOI 1	+0.8	N.D.	-0.3	+0.5	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	N.D.	-0.5	+0.3	-0.3
seeds	Growth on radish seeds for 72 hours	+1.5	N.D.	-0.4	+0.3	-1.3
phage	Wcs_0.1	+0.2	N.D.	-0.6	+0.9	-0.3
phage	P. simiae OR1 MOI 0.1	+0.3	N.D.	-0.0	+0.8	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.9	N.D.	+0.5	-0.3	-0.3
phage	P. simiae OR Antrim MOI 0.1	+0.6	N.D.	-0.4	+0.2	+0.6
phage	JP1 MOI 0.1	+0.3	N.D.	-0.1	+1.4	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.6	N.D.	+0.3	+0.8	+0.0
phage	P. simiae ORA MOI 0.1	+0.4	N.D.	+0.5	+0.2	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	N.D.	+1.1	+0.4	+0.2
stress	methylglyoxal 0.032 vol%	+0.9	N.D.	+0.1	+1.0	+0.8