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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3142 and GFF3143 are separated by 128 nucleotides
GFF3143 and GFF3144 are separated by 49 nucleotides
GFF3144 and GFF3145 are separated by 2 nucleotides
GFF3145 and GFF3146 are separated by 43 nucleotides
GFF3142 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 573,207 to 576,818
GFF3142
GFF3143 - hypothetical protein, at 576,947 to 577,816
GFF3143
GFF3144 - hypothetical protein, at 577,866 to 579,218
GFF3144
GFF3145 - Two-component system response regulator QseB, at 579,221 to 579,847
GFF3145
GFF3146 - no description, at 579,891 to 580,481
GFF3146
Group
Condition
GFF3142
GFF3143
GFF3144
GFF3145
GFF3146
complex community
Community=Locust bean gum; Passage=4
-0.4
-0.2
-0.1
-4.7
+0.0
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.2
-0.4
+0.7
-4.9
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.5
+0.0
-1.5
-0.7
complex community
Community=guar; Passage=4
-0.3
+0.2
-0.2
-0.4
-1.8
complex community
Community=arabino-guar; Passage=4
-0.2
+0.4
-2.1
+0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.0
-0.4
+0.1
-0.8
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.1
+0.2
-0.5
-1.0
phage
phage_bap4
+0.2
+0.0
-0.1
-0.5
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.1
-0.3
-0.2
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.1
-0.4
-0.1
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.1
+0.1
-0.2
-0.9
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
+0.1
-0.3
-0.4
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
-0.2
-0.2
+0.3
-0.6
complex community
Community=guar; Passage=4
+0.1
-0.6
-0.5
+0.6
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
-0.0
+0.3
+0.0
-1.0
complex community
Community=arabino-guar; Passage=4
-0.3
+0.0
+0.3
+0.2
-0.6
complex community
Community=arabino-guar; Passage=4
-0.2
-0.0
+0.2
+0.3
-0.6
phage
phage_bap4
+0.1
-0.0
-0.2
+0.4
-0.5
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-0.2
-0.5
+0.5
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
+0.0
-0.5
+0.5
-0.1
complex community
Community=guar; Passage=4
+0.2
+0.3
+0.1
-0.2
-0.5
phage
phage_bap4
+0.1
+0.1
+0.3
+0.2
-0.7
phage
phage_bap4
+0.1
+0.1
+0.4
+0.1
-0.5
complex community
Community=arabino-guar; Passage=4
-0.2
-0.2
+0.1
-0.0
+0.7
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.2
+0.1
-0.3
+0.3
+0.2
complex community
Community=Kojac gum; Passage=4
+0.1
+0.3
-0.6
-0.7
+1.5
phage
phage_bap4
+0.1
+0.2
-0.1
+0.6
+0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
+0.1
+0.0
+0.6
+0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.1
+0.3
+0.3
+0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
+0.2
+0.4
-0.0
+0.4
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