Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16050	PS417_16055	PS417_16060	PS417_16065	PS417_16070
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.4	-1.2	-0.5	-0.2
carbon source	L-Valine (C)	-0.0	-0.6	-0.1	-1.7	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.0	-0.5	-0.2	-1.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.8	-0.5	+0.7	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-1.3	-0.3	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-1.1	+0.3	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.8	-0.2	-0.7	+0.8
solid stress	Fraxetin 1 mM; solid stress	+0.2	-0.5	+0.4	-1.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-1.1	+0.8	-0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+1.0	-1.5	-0.1	-0.1
soil	soil sample 6; outgrowth in LB	-0.4	-0.4	-0.5	+0.1	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.3	-0.1	-0.4	-1.0	+0.2
stress	methylglyoxal 0.032 vol%	+0.6	-0.9	-0.7	+0.6	+0.2
phage	Wcs_1	+0.7	-0.4	+0.7	-0.8	+0.2
root	root sample 6; outgrowth in LB	+0.0	-0.8	-0.8	-0.0	+2.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	-1.0	+0.4	+0.8	-0.1
phage	JP1 MOI 10	+0.4	+0.1	+0.9	-0.6	-0.2
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.3	+0.7	+0.7	-0.2
soil	soil sample 5; outgrowth in LB	-0.7	+1.0	+0.2	-0.9	+1.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.8	-0.5	+0.1	-1.1	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+2.0	-0.3	-0.0	-0.1
phage	JP1 MOI 10	-0.4	+1.3	-0.6	+0.9	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.3	-1.0	+1.0	+0.6
phage	JP1 MOI 1	-0.3	+1.7	-0.1	+0.2	+0.2
soil	soil sample 7; outgrowth in LB	-0.3	+0.2	+0.4	+0.4	+1.0
seeds	Growth on radish seeds for 72 hours	+1.3	-0.2	-0.7	+1.5	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	+0.2	+0.0	+0.9	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.0	+0.9	+0.7	+0.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	+0.2	+1.1	+0.0	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+3.5	+0.1	+0.2	-0.0