Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16045	PS417_16050	PS417_16055	PS417_16060	PS417_16065
carbon source	L-Valine (C)	-0.5	-0.0	-0.6	-0.1	-1.7
soil	soil sample 5; outgrowth in LB	-2.4	-0.7	+1.0	+0.2	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.6	-0.4	-1.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	+0.2	-0.9	+0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.5	-0.8	-0.5	+0.7
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.8	+0.8	-0.5	+0.1	-1.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+1.0	-0.5	-0.2	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.8	-0.1	-0.8	-0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.6	-1.1	+0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.4	-1.3	-0.3	+0.3
phage	Wcs_1	-0.4	+0.7	-0.4	+0.7	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.6	+1.0	-1.5	-0.1
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	+0.8	-0.3	-0.9	+0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5	+1.3	-0.1	-0.4	-1.0
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	+0.7	-0.1	-0.9	+0.5	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.6	+0.3	-1.0	+1.0
stress	methylglyoxal 0.032 vol%	+1.2	+0.6	-0.9	-0.7	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.5	+2.0	-0.3	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	+0.4	-1.0	+0.4	+0.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.1	-0.4	-1.0	+0.3	+0.4
phage	JP1 MOI 10	+0.6	+0.4	+0.1	+0.9	-0.6
phage	P. simiae Grant Run MOI 0.1	+0.8	+0.6	-0.2	-0.3	+0.7
supernatant control	Vogels_fungal_media 0.1X	+0.5	+0.8	+0.7	-0.4	+0.1
phage	JP1 MOI 0.1	+1.5	-0.2	+0.3	-0.5	+0.6
phage	JP1 MOI 1	+0.3	-0.3	+1.7	-0.1	+0.2
seeds	Growth on radish seeds for 72 hours	+0.1	+1.3	-0.2	-0.7	+1.5
phage	JP1 MOI 10	+0.9	-0.4	+1.3	-0.6	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	-0.1	+0.8	+0.6	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+2.5	+0.0	+0.0	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.3	+3.5	+0.1	+0.2