Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16025	PS417_16030	PS417_16035	PS417_16045	PS417_16050
soil	soil sample 5; outgrowth in LB	N.D.	+0.1	-0.6	-2.4	-0.7
motility	inner cut, LB soft agar motility assay	N.D.	-0.3	-0.6	-0.7	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	-1.2	-0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-0.3	-1.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.5	+0.4	-0.3	-0.6
phage	Wcs_1	N.D.	-0.3	-0.5	-0.4	+0.7
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.1	-0.3	-0.7	+0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	+0.0	-0.2	-0.8	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	+0.4	+0.4	-0.6
phage	JP1 MOI 10	N.D.	-0.1	-0.4	+0.9	-0.4
carbon source	L-Valine (C)	N.D.	-0.1	-0.7	+0.2	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.0	+0.3	+0.8	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+1.4	-0.2	-0.6
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.0	-0.4	+0.5	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.6	+0.4	+0.3	-0.3
seeds	Growth on radish seeds for 72 hours	N.D.	-0.0	-0.2	+0.1	+1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.3	+0.6	-0.4	+0.6
phage	JP1 MOI 10	N.D.	-0.2	+0.4	+0.6	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.2	+0.4	-0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.1	+1.2	+0.2	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.0	-0.3	+2.1	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.0	+0.7	-0.6	+1.3
phage	JP1 MOI 0.1	N.D.	+0.0	+0.3	+1.5	-0.2
phage	P. simiae Grant Run MOI 0.1	N.D.	+0.2	+0.1	+0.8	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.1	+0.7	+0.6	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.0	+0.8	+1.1	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.0	+1.8	-0.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.1	+0.0	+2.5	+0.0
stress	methylglyoxal 0.032 vol%	N.D.	+0.1	+0.5	+1.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.2	+1.3	+0.5	+1.3