Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15970	PS417_15975	PS417_15980	PS417_15985	PS417_15990
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-2.4	-0.1	-0.4	+0.1
soil	soil sample 8; outgrowth in LB	-1.1	-0.7	-0.5	-0.6	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	-2.9	-0.4	+0.3	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	-1.9	+0.1	-0.3	-0.6
carbon source	2'-Deoxyinosine 5 mM (C)	-0.7	-1.5	+0.4	-0.7	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-1.2	-0.2	-0.6	-0.5
phage	P. simiae OR Antrim MOI 1	-0.4	-1.0	-0.4	-0.6	-0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.7	+0.1	-0.4	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-2.0	-0.1	-0.6	+0.4
carbon source	L-Valine (C)	-0.1	-2.3	+0.0	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-2.0	+0.1	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	-1.2	+0.3	+0.0	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.7	-0.9	+0.3	-0.5
solid stress	Fraxetin 3 mM; solid stress	-0.2	-1.9	-0.2	-0.0	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	-1.9	+0.2	-0.3	+0.0
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.1	-1.8	-0.0	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	-1.9	+1.2	+0.3	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	-1.7	+0.4	+0.2	+0.1
phage	P. simiae ORA MOI 10	-0.1	-1.6	+0.3	+0.4	-0.1
phage	JP1 MOI 1	-0.7	-0.7	-0.2	-0.1	+1.1
stress	methylglyoxal 0.032 vol%	+0.6	-0.6	+0.7	-0.5	-0.6
seeds	Growth on radish seeds for 72 hours	-1.0	-0.4	+0.3	+0.2	+0.9
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.5	+0.8	-0.5	+0.6	-0.3
carbon source	Carbon source L-Citrulline 10 mM	-0.4	+1.2	-0.3	+0.3	-0.5
soil	soil sample 6; outgrowth in LB	-0.4	+2.0	-0.3	-0.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.8	-0.1	-0.3	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+1.9	-0.5	+0.1	+0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.7	+1.2	-0.4	+0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	+2.9	+0.1	-0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+1.1	+0.5	+0.0	+1.4