Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15935	PS417_15940	PS417_15945	PS417_15950	PS417_15955
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.5	-0.6	N.D.	-0.1	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.5	+0.3	N.D.	-0.2	+0.3
carbon source	L-Valine (C)	-3.9	+0.5	N.D.	-0.1	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.8	-0.1	N.D.	+0.2	-0.2
carbon source	L-Valine (C)	-2.8	-0.0	N.D.	+0.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.5	+0.1	N.D.	+0.5	+0.2
phage	P. simiae OR Antrim MOI 10	-1.6	-0.1	N.D.	-0.0	+0.1
carbon source	L-Leucine (C)	-1.4	-0.2	N.D.	+0.1	+0.3
nitrogen source	Inosine (N)	-1.0	+0.3	N.D.	+0.1	-0.5
agar plate interaction control	Taped volatile agar plate with no fungus	-1.2	-0.3	N.D.	-0.1	+0.5
carbon source	2'-Deoxyinosine 5 mM (C)	+0.5	-0.9	N.D.	-0.3	-0.4
phage	JP1 MOI 0.1	+0.5	-0.7	N.D.	-0.1	-0.8
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-1.0	-0.0	N.D.	-0.4	+0.4
stress	methylglyoxal 0.032 vol%	+0.2	-0.3	N.D.	+0.3	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.7	+0.1	N.D.	+0.0	+0.9
soil	soil sample 3; outgrowth in LB	-0.8	-0.5	N.D.	+0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.1	+0.2	N.D.	-0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.6	N.D.	+0.8	-0.1
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.7	+0.1	N.D.	-0.2	-0.7
root	root sample 6; outgrowth in LB	+0.9	-0.6	N.D.	-0.0	-0.4
nophagecontrol	Only library	+1.1	-0.1	N.D.	-0.4	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+1.0	N.D.	-0.1	-0.3
nophagecontrol	TIme6-nophage	+1.4	+0.1	N.D.	+0.3	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.9	-0.3	N.D.	+0.3	-0.7
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.4	N.D.	+0.2	+1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	+0.1	N.D.	+0.9	-0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.0	N.D.	+0.3	+1.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.7	+0.4	N.D.	-0.4	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.0	+0.2	N.D.	-0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.4	+0.4	N.D.	-0.0	+0.2