Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15915	PS417_15920	PS417_15930	PS417_15935	PS417_15940
carbon source	L-Valine (C)	-1.7	+0.5	-0.9	-3.9	+0.5
soil	soil sample 3; outgrowth in LB	-3.3	-0.3	-0.0	-0.8	-0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.4	-1.0	-0.2	-2.5	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-1.7	-0.5	-0.6	-0.3	+0.3
phage	JP1 MOI 0.1	-2.3	-0.2	-0.1	+0.5	-0.7
phage	P. simiae OR Antrim MOI 10	-2.6	+0.3	+0.2	-0.1	-0.3
stress	methylglyoxal 0.032 vol%	-0.9	-1.1	-0.3	+0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.2	-0.1	-3.5	+0.3
root	root sample 6; outgrowth in LB	-2.3	-0.3	+0.1	+0.9	-0.6
carbon source	L-Valine (C)	+0.2	+0.3	+0.3	-2.8	-0.0
soil	soil sample 5; outgrowth in LB	-2.3	+0.0	+0.0	+0.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.2	+0.4	-0.9	-0.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	-1.2	+0.3	-0.8	+0.6	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.1	+0.5	-2.8	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.5	-0.0	+0.2	-2.5	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.5	+0.3	-1.7	+0.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x	-0.5	+0.3	-1.2	+0.7	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.5	+0.1	-0.2	+0.8	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+1.3	+0.4	-0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2	+1.4	+0.1	+0.4	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	-0.4	-0.1	+0.8	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.5	-0.6	+0.4	+1.0
phage	P. simiae OR Antrim MOI 1	-1.0	+0.4	+0.9	+0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	-0.7	+0.4	-0.1	+0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.0	-0.1	-0.1	-0.7	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.8	+0.6	-0.2	-1.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+2.7	-0.3	-0.0	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	-0.1	+0.3	+1.1	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	+0.3	-0.5	+1.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.2	+0.5	-0.1	+1.0	+0.2