Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3106 and GFF3107 are separated by 17 nucleotidesGFF3107 and GFF3108 are separated by 26 nucleotidesGFF3108 and GFF3109 are separated by 115 nucleotidesGFF3109 and GFF3110 overlap by 4 nucleotides GFF3106 - Hydrolase, alpha/beta fold family, at 533,398 to 534,291 GFF3106 GFF3107 - Oxidoreductase, aldo/keto reductase family, at 534,309 to 535,319 GFF3107 GFF3108 - Transcriptional regulator, LysR family, at 535,346 to 536,350 GFF3108 GFF3109 - Methionine ABC transporter substrate-binding protein, at 536,466 to 537,299 GFF3109 GFF3110 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 537,296 to 538,645 GFF3110
Group Condition GFF3106 GFF3107 GFF3108 GFF3109 GFF3110
complex community Community=arabino-guar; Passage=4 -0.1 -0.4 -0.3 -0.1 -0.4
complex community Community=Locust bean gum; Passage=4 -0.4 -0.1 -0.2 -0.2 -0.4
complex community Community=Locust bean gum; Passage=4 -0.3 -0.1 -0.1 -0.1 -0.5
phage phage_bap4 +0.0 -0.1 -0.2 -0.3 -0.2
complex community Community=guar; Passage=4 -0.2 -0.3 -0.1 -0.2 +0.0
complex community Community=guar; Passage=4 -0.5 -0.1 -0.2 +0.3 -0.3
complex community Community=guar; Passage=4 +0.1 +0.1 +0.1 -0.6 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 -0.2 -0.2 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.0 -0.0 -0.3 +0.1 -0.2
complex community Community=arabino-guar; Passage=4 +0.2 +0.2 +0.0 -0.3 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 -0.2 -0.4 -0.0 +0.1
complex community Community=arabino-guar; Passage=4 +0.4 -0.3 -0.2 +0.2 -0.5
complex community Community=arabino-guar; Passage=4 +0.1 +0.4 -0.2 +0.1 -0.8
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.2 +0.1 -0.2 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 -0.1 +0.1 -0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.3 -0.3 -0.0 +0.2
complex community Community=Locust bean gum; Passage=4 -0.0 -0.4 +0.4 +0.4 -0.6
phage phage_bap4 -0.1 +0.1 -0.2 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.1 -0.0 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.2 -0.1 -0.1 -0.0
complex community Community=Kojac gum; Passage=1 -0.2 +0.1 +0.2 -0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 -0.1 +0.1 +0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.4 +0.0 +0.1 +0.2 +0.1
complex community Community=guar; Passage=4 -0.2 +0.3 +0.1 +0.2 -0.4
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.2 +0.0 +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 +0.3 -0.0 +0.1 +0.1
phage phage_bap4 -0.3 +0.1 +0.1 +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 +0.2 +0.2 +0.0 -0.2
complex community Community=Locust bean gum; Passage=4 +0.5 +0.2 -0.3 -0.2 +0.3
phage phage_bap4 -0.2 +0.2 +0.2 +0.2 +0.0
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