Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15860	PS417_15865	PS417_15870	PS417_15875	PS417_15880
stress	methylglyoxal 0.032 vol%	-0.7	-1.9	+0.3	-3.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.9	-0.3	-1.9	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.4	-0.2	-2.9	-0.6
soil	soil sample 5; outgrowth in LB	+0.2	+0.8	-0.7	-2.9	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.5	+0.6	-1.5	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.0	-0.2	-1.9	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.3	-0.3	-2.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.2	-0.3	-0.3	-1.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-0.3	+0.1	-1.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.6	-0.1	-1.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-0.5	+0.1	-1.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-1.1	-0.7	+0.4	-0.4
liquid stress	Fraxetin 3 mM; liquid stress	+0.3	-0.1	+0.1	-1.4	-0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	+0.9	+0.1	-1.0	-1.2
carbon source	L-Histidine (C)	-0.3	+0.9	-0.4	-1.1	-0.3
carbon source	2-Deoxy-D-Ribose (C)	-0.4	+0.4	+0.4	-1.1	-0.2
seeds	Growth on radish seeds for 72 hours	-0.5	-0.7	+0.7	-0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.6	+0.4	-1.1	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	+0.2	+0.7	-0.7
phage	P. simiae OR1 MOI 0.1	+0.3	-0.8	-0.0	-0.7	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.3	+0.7	-1.3	+1.0
nophagecontrol	Only library	-0.7	+0.1	+0.7	+0.9	-0.5
carbon source	2'-Deoxyinosine 5 mM (C)	+0.6	-0.8	+0.3	+0.5	+0.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.1	-0.1	-0.1	+1.6	-0.3
phage	P. simiae ORA MOI 0.1	+0.3	+0.6	+0.2	+0.8	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.2	-0.6	+1.1	-0.6	+0.3
stress	Gentamicin 0.008 mg/ml	-0.1	+0.9	+0.2	+1.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.3	+0.7	+1.5	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.2	+0.5	-0.2	+1.1	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.4	-0.1	+1.7	+0.3