Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00150 and PS417_00155 are separated by 96 nucleotidesPS417_00155 and PS417_00160 are separated by 1 nucleotidesPS417_00160 and PS417_00165 are separated by 48 nucleotidesPS417_00165 and PS417_00170 are separated by 183 nucleotides PS417_00150: PS417_00150 - 4,5-dioxygenase, at 32,551 to 32,880 _00150 PS417_00155: PS417_00155 - 2-dehydro-3-deoxygalactonokinase, at 32,977 to 33,936 _00155 PS417_00160: PS417_00160 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 33,938 to 34,558 _00160 PS417_00165: PS417_00165 - galactonate dehydratase, at 34,607 to 35,755 _00165 PS417_00170: PS417_00170 - glucarate transporter, at 35,939 to 37,246 _00170
Group Condition PS417_00150 PS417_00155 PS417_00160 PS417_00165 PS417_00170
carbon source D-Galactose (C) -0.8 -2.4 -5.4 -3.2 -0.8
carbon source D-Galactose (C) -0.8 -1.4 -4.7 -3.7 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.0 -4.5 -0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.4 -4.1 -0.2 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.1 -4.9 -0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.0 -4.0 +0.3 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.7 -4.1 +0.0 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 +0.3 -2.1 -0.9 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.2 -3.9 -0.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.0 -2.3 -0.5 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.4 -2.5 +0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.1 -2.6 -0.0 -0.1
soil soil sample 5; outgrowth in LB -0.1 -1.0 -1.4 -0.3 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.6 -2.0 +0.3 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.2 -2.3 +0.2 -0.1
soil soil sample 8; outgrowth in LB -0.5 -0.2 -1.7 +0.2 -0.2
root root sample 6; outgrowth in LB -0.7 -0.4 -1.3 -0.1 +0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.2 -0.4 -0.2 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.0 -1.8 -0.3 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -0.3 -1.2 -0.1 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB -0.9 -0.1 -0.7 -0.5 +0.2
carbon source D-Mannose (C) -0.2 +0.4 -1.5 -0.5 -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 -0.8 -1.1 +0.6 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 -0.3 -1.8 -0.4 -0.2
rhizosphere rhizosphere sample 8; outgrowth in LB -0.4 -0.7 -0.9 +0.4 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.5 -1.4 +0.1 -0.1
seeds Growth on radish seeds for 72 hours +0.6 -0.2 -0.9 -0.5 -0.2
agar plate interaction control Taped volatile agar plate with no fungus -0.4 +0.7 -0.2 -0.6 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.9 -0.7 +0.0 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +0.9 -0.6 -0.4 +0.3
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