Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_15825	PS417_15830	PS417_15835	PS417_15840	PS417_15845
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.1	-0.1	-0.3	-1.0
carbon source	L-Valine (C)	-0.5	-0.1	-0.3	-0.5	-0.1
stress	methylglyoxal 0.032 vol%	-0.4	+0.1	-0.2	-0.9	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.4	+0.4	-0.2	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.2	-0.3	-0.4	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.2	+0.3	-0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.0	+0.2	-0.4	-0.8
phage	JP1 MOI 0.1	+0.2	-0.0	+0.1	-0.6	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	+0.3	-0.2	-0.9	-0.3
phage	P. simiae OR1 MOI 0.1	-0.3	-0.2	+0.2	-0.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.5	-0.2	-0.4	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.2	-0.5	+0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.1	-0.4	+0.5	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.2	-0.3	+0.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	-0.4	+0.1	+0.4
phage	P. simiae Grant Run MOI 10	+0.1	+0.1	+0.2	-0.7	-0.3
seeds	Growth on radish seeds for 72 hours	-0.1	+0.0	+0.6	-0.2	-0.7
soil	soil sample 4; outgrowth in LB	-0.0	+0.1	+0.6	-0.5	-0.5
soil	soil sample 7; outgrowth in LB	-0.0	-0.3	+0.4	+0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.7	+0.2	+0.4	+0.0	+0.2
root	root sample 6; outgrowth in LB	+0.1	-0.1	+1.1	-0.3	-0.4
soil	soil sample 5; outgrowth in LB	+0.4	-0.2	+1.0	-0.5	-0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	+0.0	+0.9	-0.2	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7	+0.0	-0.4	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.2	+0.3	+1.0	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	-0.1	+0.2	+0.5	-0.2
seeds	Growth on radish seeds for 72 hours	-0.1	-0.0	+0.7	-0.1	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.2	+0.7	-0.0	+0.6
carbon source	L-Valine (C)	+0.5	+0.6	-0.1	+0.5	-0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.0	-0.1	+0.9	+0.4	+0.4