Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15815	PS417_15820	PS417_15825	PS417_15830	PS417_15835
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-2.2	-0.5	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-2.1	+0.1	-0.1	-0.5
soil	soil sample 3; outgrowth in LB	-0.4	-1.8	-0.5	+0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.8	-0.3	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-1.0	-0.3	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.9	+0.1	-0.1	+0.0
seeds	Growth on radish seeds for 72 hours	-0.3	-1.5	-0.1	+0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-1.0	-0.2	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.0	-0.1	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.5	-0.1	+0.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	-1.3	-0.3	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	-1.3	+0.1	-0.1	-0.2
carbon source	L-Valine (C)	+0.4	-0.6	-0.5	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-1.1	-0.1	-0.3	-0.1
seeds	Growth on radish seeds for 72 hours	+0.0	-1.4	-0.1	+0.0	+0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.7	-0.7	+0.1	-0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	-0.6	-0.7	+0.2	+0.4
phage	JP1 MOI 10	-0.5	+0.8	-0.3	-0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	+0.3	-0.1	-0.5	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	+0.5	+0.7	+0.0	-0.4
soil	soil sample 5; outgrowth in LB	-0.2	+0.1	+0.4	-0.2	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.8	+0.7	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+2.0	-0.1	+0.0	-0.4
root	root sample 6; outgrowth in LB	+0.7	-0.6	+0.1	-0.1	+1.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.5	+0.0	-0.2	-0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+1.7	-0.2	-0.2	+0.6
carbon source	L-Citrulline (C)	-0.0	+1.9	+0.0	+0.0	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+1.2	+0.3	-0.2	+0.2
stress	Dimethyl Sulfoxide 5 vol%	+0.2	+1.6	-0.1	-0.0	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+1.0	+0.2	-0.0	+0.3