Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15800	PS417_15805	PS417_15810	PS417_15815	PS417_15820
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.1	-0.8	-0.7	-0.7	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-2.4	+0.1	+0.2	-0.9
solid stress	Fraxetin 3 mM; solid stress	-2.0	-1.8	-0.1	-0.0	+0.4
solid stress	Fraxetin 3 mM; solid stress	-2.2	-1.4	+0.0	+0.1	+0.3
solid stress	Fraxetin 2 mM; solid stress	-1.7	-1.0	-0.1	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.8	-0.2	+0.2	-1.9
solid stress	Fraxetin 2 mM; solid stress	-1.6	-0.7	-0.2	+0.1	-0.3
phage	JP1 MOI 10	+0.5	-3.6	+0.1	-0.5	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	+0.2	+0.1	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.7	+0.3	+0.1	-1.0
solid stress	Fraxetin 3 mM; solid stress	-1.6	-1.5	+0.2	+0.2	+0.5
solid stress	Fraxetin 3 mM; solid stress	-1.5	-1.4	+0.1	+0.2	+0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.2	-1.5	-0.2	-0.5	+0.4
soil	soil sample 3; outgrowth in LB	-0.4	+0.9	-0.0	-0.4	-1.8
seeds	Growth on radish seeds for 72 hours	-0.5	+0.8	-0.4	-0.3	-1.5
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	-2.0	-0.0	+0.2	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.5	+0.0	+0.2	-2.1
phage	JP1 MOI 10	-0.6	-1.4	-0.2	+0.1	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-0.6	+0.4	+0.5	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	-0.9	+0.2	-0.4	+1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.9	-0.3	+0.2	-1.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.2	-0.0	-0.2	+2.0
stress	Spectinomycin 0.4 mg/ml	+1.0	+1.1	-0.1	+0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+1.7	-0.2	+0.2	+1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+1.0	+0.2	+1.5	+0.0
stress	Thallium(I) acetate 0.0625 mg/ml	+1.6	+1.0	+0.2	-0.0	+0.6
stress	Paraquat dichloride 0.002 mg/ml	+1.2	+1.8	+0.2	-0.1	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	+4.6	-0.3	-0.0	+0.4
stress	Paraquat dichloride 0.008 mg/ml	+2.6	+2.8	+0.2	+0.0	+0.6
stress	Gentamicin 0.008 mg/ml	+3.9	+4.1	+0.4	+0.1	-0.3