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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_01565 and PS417_01570 are separated by 0 nucleotides
PS417_01570 and PS417_01575 are separated by 39 nucleotides
PS417_01575 and PS417_01580 are separated by 9 nucleotides
PS417_01580 and PS417_01585 are separated by 66 nucleotides
PS417_01565: PS417_01565 - imidazole glycerol phosphate synthase, at 346,751 to 347,389
_01565
PS417_01570: PS417_01570 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 347,390 to 347,647
_01570
PS417_01575: PS417_01575 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16)
(from data)
, at 347,687 to 348,424
_01575
PS417_01580: PS417_01580 - imidazole glycerol phosphate synthase, at 348,434 to 349,204
_01580
PS417_01585: PS417_01585 - amino acid ABC transporter substrate-binding protein, at 349,271 to 350,026
_01585
Group
Condition
PS417
_01565
PS417
_01570
PS417
_01575
PS417
_01580
PS417
_01585
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-9.4
-5.8
-9.3
-3.9
-0.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.9
-7.8
-9.2
-3.9
-0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-9.5
-8.0
-5.7
-4.0
+0.6
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-7.6
-5.8
-9.3
-4.0
+0.1
carbon source
L-Valine (C)
-9.0
-7.0
-6.2
-3.9
-0.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-9.7
-2.1
-9.6
-4.1
-0.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-8.7
-3.8
-8.8
-3.7
+0.1
carbon source
L-Tryptophan (C)
-9.5
-1.0
-9.6
-4.0
-0.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.0
-5.8
-9.4
-3.9
-0.1
carbon source
L-Valine (C)
-4.5
-7.0
-8.4
-2.8
+0.0
carbon source
Inosine (C)
-7.0
-1.7
-9.6
-4.0
-0.3
nitrogen source
nitrate (N)
-5.5
-4.1
-9.2
-3.6
+0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-8.8
-0.8
-8.9
-3.8
+0.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-2.8
-5.8
-9.3
-3.9
-0.2
carbon source
Putrescine (C)
-5.8
-2.8
-9.3
-3.8
+0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.7
-1.2
-9.4
-4.0
-0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-7.7
-3.2
-7.7
-4.0
+1.2
carbon source
NAG (C)
-5.6
-1.9
-9.6
-4.0
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-7.6
-2.6
-6.6
-4.0
+0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.1
-4.3
-6.9
-4.1
-0.2
carbon source
NAG (C)
-5.9
-1.6
-9.5
-3.5
+0.1
carbon source
L-Leucine (C)
-5.3
-6.3
-6.3
-2.9
+0.5
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.4
-0.9
-9.4
-3.9
-0.3
carbon source
Uridine (C)
-4.5
-1.7
-9.4
-3.9
-0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-9.4
-2.8
-6.6
-0.9
+0.3
carbon source
2-Deoxy-D-ribonic lithium salt (C)
-5.3
-3.3
-8.1
-2.1
-0.1
carbon source
Gly-Glu (C)
-5.5
-3.6
-7.0
-3.3
+0.5
nitrogen source
Uridine (N)
-3.8
-1.8
-9.4
-3.7
-0.2
carbon source
L-Malic (C)
-6.1
-3.3
-6.2
-3.3
+0.2
carbon source
D-Glucose (C)
-7.1
-2.9
-5.5
-3.0
-0.2
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