Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15790	PS417_15795	PS417_15800	PS417_15805	PS417_15810
solid stress	Fraxetin 3 mM; solid stress	-0.2	N.D.	-2.0	-1.8	-0.1
phage	JP1 MOI 10	-0.7	N.D.	+0.5	-3.6	+0.1
solid stress	Fraxetin 3 mM; solid stress	-0.3	N.D.	-1.6	-1.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	N.D.	-0.5	-2.4	+0.1
solid stress	Fraxetin 2 mM; solid stress	-0.2	N.D.	-1.7	-1.0	-0.1
solid stress	Fraxetin 3 mM; solid stress	-0.1	N.D.	-1.5	-1.4	+0.1
soil	soil sample 7; outgrowth in LB	-0.4	N.D.	-1.0	-1.0	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	N.D.	-0.5	-2.0	-0.0
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.7	N.D.	-0.2	-1.5	-0.2
solid stress	Fraxetin 3 mM; solid stress	+0.9	N.D.	-2.2	-1.4	+0.0
solid stress	Fraxetin 2 mM; solid stress	-0.1	N.D.	-1.6	-0.7	-0.2
phage	JP1 MOI 10	-0.4	N.D.	-0.6	-1.4	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	-0.2	N.D.	-0.9	-1.1	-0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.4	N.D.	-1.1	-0.8	-0.7
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2	-0.2	N.D.	-0.8	-1.1	-0.2
solid stress	Fraxetin 2 mM; solid stress	-0.3	N.D.	-1.2	-0.7	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.9	N.D.	-0.3	-0.7	+0.2
liquid stress	Fraxetin 3 mM; liquid stress	+0.4	N.D.	-1.1	-0.7	-0.1
phage	P. simiae Grant Run MOI 10	-0.7	N.D.	+0.3	-1.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	N.D.	-0.1	-1.7	+0.3
seeds	Growth on radish seeds for 72 hours	-0.9	N.D.	-0.5	+0.8	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.7	N.D.	+0.4	+0.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	+0.5	+0.9	-0.3
stress	Spectinomycin 0.4 mg/ml	+0.1	N.D.	+1.0	+1.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	N.D.	+0.2	+1.7	-0.2
stress	Thallium(I) acetate 0.0625 mg/ml	-0.0	N.D.	+1.6	+1.0	+0.2
stress	Paraquat dichloride 0.002 mg/ml	+0.1	N.D.	+1.2	+1.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	N.D.	-0.5	+4.6	-0.3
stress	Paraquat dichloride 0.008 mg/ml	+0.1	N.D.	+2.6	+2.8	+0.2
stress	Gentamicin 0.008 mg/ml	+0.4	N.D.	+3.9	+4.1	+0.4