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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3073 and GFF3074 are separated by 9 nucleotides
GFF3074 and GFF3075 are separated by 16 nucleotides
GFF3075 and GFF3076 are separated by 148 nucleotides
GFF3076 and GFF3077 are separated by 61 nucleotides
GFF3073 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 506,004 to 506,978
GFF3073
GFF3074 - Putative polysaccharide deacetylase, at 506,988 to 507,773
GFF3074
GFF3075 - Surface antigen, at 507,790 to 508,740
GFF3075
GFF3076 - SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19), at 508,889 to 509,638
GFF3076
GFF3077 - Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13), at 509,700 to 511,436
GFF3077
Group
Condition
GFF3073
GFF3074
GFF3075
GFF3076
GFF3077
complex community
Community=guar; Passage=4
-2.0
-0.0
-0.6
+0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-1.0
-0.4
-0.2
-0.1
-0.2
complex community
Community=arabino-guar; Passage=4
-0.5
+0.1
-0.3
-0.2
-0.3
complex community
Community=Kojac gum; Passage=4
-0.3
+0.5
-0.4
-0.7
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.5
+0.0
-0.2
-0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.6
-0.1
-0.1
-0.0
-0.0
complex community
Community=arabino-guar; Passage=4
-0.6
+0.1
-0.0
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
-0.3
-0.1
-0.0
+0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.1
-0.3
-0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.5
-0.0
-0.0
-0.1
-0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.3
-0.0
-0.0
-0.0
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
-0.2
-0.1
-0.0
-0.0
complex community
Community=Kojac gum; Passage=1
-0.2
+0.0
-0.3
-0.1
+0.0
no phage control
no phage control
-0.4
+0.0
-0.1
+0.0
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.5
-0.2
+0.1
-0.1
+0.0
complex community
Community=Locust bean gum; Passage=4
+0.3
+0.0
-0.6
-0.3
+0.0
complex community
Community=Locust bean gum; Passage=4
+1.0
-0.6
-0.4
-0.1
-0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.4
-0.1
+0.2
-0.1
-0.1
no phage control
no phage control
-0.2
-0.1
-0.1
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.7
-0.0
+0.1
+0.3
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.5
-0.0
+0.0
+0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.5
+0.2
-0.0
+0.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
-0.2
-0.1
-0.0
+0.0
phage
phage_bap4
-0.4
+0.1
-0.0
+0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
+0.1
-0.1
+0.1
-0.1
complex community
Community=guar; Passage=4
-0.0
+0.4
-0.3
+0.2
-0.1
complex community
Community=arabino-guar; Passage=4
-0.4
+0.4
+0.3
-0.1
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.6
+0.3
+0.0
-0.4
-0.1
complex community
Community=arabino-guar; Passage=4
+0.9
-0.3
-0.0
-0.0
+0.1
complex community
Community=guar; Passage=4
+1.1
-0.1
-0.4
+0.1
+0.1
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