Fitness for 5 genes in Hydrogenophaga sp. GW460-11-11-14-LB1

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500 ntGFF3066 and GFF3067 overlap by 4 nucleotidesGFF3067 and GFF3068 are separated by 4 nucleotidesGFF3068 and GFF3069 are separated by 85 nucleotidesGFF3069 and GFF3070 overlap by 4 nucleotides GFF3066 - LptA, protein essential for LPS transport across the periplasm, at 146,135 to 146,608 GFF3066 GFF3067 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 146,605 to 147,402 GFF3067 GFF3068 - RNA polymerase sigma-54 factor RpoN, at 147,407 to 149,035 GFF3068 GFF3069 - Methyltransferase (EC 2.1.1.-), at 149,121 to 150,449 GFF3069 GFF3070 - FIG00348512: hypothetical protein, at 150,446 to 150,880 GFF3070
Group Condition GFF3066 GFF3067 GFF3068 GFF3069 GFF3070
carbon source Ying_Others16 rep B; time point 3 N.D. N.D. -6.6 -0.0 -0.6
carbon source Ying_sugar7 rep A; time point 3 N.D. N.D. -7.1 -0.0 +0.1
carbon source Ying_sugar7 rep C; time point 3 N.D. N.D. -6.5 -0.0 -0.0
carbon source Ying_sugar7 rep C; time point 2 N.D. N.D. -4.4 -0.1 -0.7
carbon source Ying_sugar7 rep A; time point 2 N.D. N.D. -4.7 +0.1 -0.2
carbon source Ying_sugar7 rep B; time point 2 N.D. N.D. -4.4 -0.0 +0.1
carbon source Ying_sugar7 rep C; time point 1 N.D. N.D. -2.7 -0.1 -0.1
carbon source Ying_Others16 rep A; time point 3 N.D. N.D. -2.2 -0.3 -0.1
carbon source Ying_sugar7 rep B; time point 1 N.D. N.D. -2.3 -0.0 -0.1
carbon source Ying_sugar7 rep A; time point 1 N.D. N.D. -2.1 +0.1 +0.1
carbon source Ying_sugar7 rep B; time point 3 N.D. N.D. -1.0 -0.2 -0.2
carbon source Ying_OrganicAcid7 rep A; time point 2 N.D. N.D. -0.9 -0.1 -0.4
carbon source Ying_OrganicAcid7 rep C; time point 3 N.D. N.D. -0.7 -0.2 -0.4
carbon source Ying_OrganicAcid7 rep B; time point 2 N.D. N.D. -0.9 -0.1 -0.3
carbon source Ying_Others16 rep C; time point 3 N.D. N.D. -1.1 +0.1 -0.2
carbon source Ying_OrganicAcid7 rep B; time point 3 N.D. N.D. -1.0 -0.1 -0.0
carbon source Ying_Nucleobase14 rep B; time point 2 N.D. N.D. -1.1 -0.1 +0.3
carbon source Ying_AminoAcid20 rep C; time point 3 N.D. N.D. -0.4 -0.3 -0.3
carbon source Ying_Others16 rep A; time point 2 N.D. N.D. -0.5 +0.0 -0.4
carbon source Ying_OrganicAcid7 rep A; time point 3 N.D. N.D. -1.2 +0.1 +0.3
carbon source Ying_Nucleobase14 rep A; time point 1 N.D. N.D. -0.7 +0.1 -0.1
carbon source Ying_OrganicAcid7 rep C; time point 2 N.D. N.D. -0.8 -0.1 +0.2
carbon source Ying_AminoAcid20 rep A; time point 3 N.D. N.D. -0.5 -0.4 +0.2
carbon source Ying_Nucleobase14 rep A; time point 2 N.D. N.D. -1.1 +0.0 +0.4
carbon source Ying_Nucleobase14 rep C; time point 2 N.D. N.D. -1.1 -0.0 +0.5
carbon source Ying_all64 rep C; time point 3 N.D. N.D. +0.6 -0.4 -0.5
carbon source Ying_OrganicAcid7 rep B; time point 1 N.D. N.D. -0.5 +0.0 +0.3
carbon source Ying_OrganicAcid7 rep C; time point 1 N.D. N.D. -0.5 +0.1 +0.3
carbon source Ying_Nucleobase14 rep C; time point 1 N.D. N.D. -0.8 +0.1 +0.8
carbon source Ying_all64 rep C; time point 2 N.D. N.D. +0.8 -0.2 +0.4
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