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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF304 and GFF305 are separated by 2 nucleotides
GFF305 and GFF306 are separated by 55 nucleotides
GFF306 and GFF307 overlap by 34 nucleotides
GFF307 and GFF308 are separated by 520 nucleotides
GFF304 - Ubiquinone/menaquinone biosynthesis methyltransferase family protein, at 337,386 to 338,174
GFF304
GFF305 - uncharacterized domain / RidA/YER057c/UK114 superfamily, group 5, at 338,177 to 339,214
GFF305
GFF306 - FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 339,270 to 340,067
GFF306
GFF307 - FIG143263: Glycosyl transferase, at 340,034 to 340,810
GFF307
GFF308 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 341,331 to 342,062
GFF308
Group
Condition
GFF304
GFF305
GFF306
GFF307
GFF308
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
-1.1
+0.0
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
-1.1
-0.1
-0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.7
-0.0
+0.0
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-1.0
-0.1
-0.0
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
-0.7
-0.1
+0.1
-0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.2
-0.3
-0.3
+0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.3
-0.7
-0.1
+0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-1.0
+0.2
-0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.8
+0.0
+0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.6
+0.1
-0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
-0.7
+0.0
+0.0
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
-0.8
-0.1
+0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.7
+0.0
-0.0
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
-0.4
+0.2
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.9
+0.0
+0.2
+0.5
complex community
Community=guar; Passage=4
+0.2
-0.0
-0.4
+0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
-0.8
+0.1
+0.3
+0.4
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.3
+0.2
-0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.6
+0.1
+0.3
+0.5
complex community
Community=arabino-guar; Passage=4
+0.3
+0.3
-0.2
+0.1
-0.3
complex community
Community=Kojac gum; Passage=4
+0.4
+0.4
+0.3
-0.3
-0.3
complex community
Community=arabino-guar; Passage=4
+0.0
+0.4
-0.4
+0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
-0.2
+0.4
-0.1
+0.3
complex community
Community=Locust bean gum; Passage=4
+0.7
+0.3
+0.0
-0.7
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.4
+0.2
-0.0
+0.3
-0.4
complex community
Community=guar; Passage=4
+0.5
+0.1
+0.3
-0.1
-0.2
complex community
Community=arabino-guar; Passage=4
+0.2
+0.2
-0.2
+0.3
+0.3
complex community
Community=Locust bean gum; Passage=4
+0.3
-0.1
+0.6
-0.1
+0.3
complex community
Community=guar; Passage=4
+0.4
-0.1
+0.8
-0.4
+0.4
complex community
Community=arabino-guar; Passage=4
+0.5
-0.1
+0.8
-0.2
+0.3
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