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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3055 and GFF3056 are separated by 225 nucleotides
GFF3056 and GFF3057 are separated by 27 nucleotides
GFF3057 and GFF3058 are separated by 98 nucleotides
GFF3058 and GFF3059 are separated by 28 nucleotides
GFF3055 - Fumarate hydratase class II (EC 4.2.1.2), at 3,129,958 to 3,131,343
GFF3055
GFF3056 - hypothetical protein, at 3,131,569 to 3,132,258
GFF3056
GFF3057 - ClpXP protease specificity-enhancing factor SspBalpha, at 3,132,286 to 3,132,762
GFF3057
GFF3058 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 3,132,861 to 3,133,448
GFF3058
GFF3059 - hypothetical protein, at 3,133,477 to 3,133,764
GFF3059
Group
Condition
GFF3055
GFF3056
GFF3057
GFF3058
GFF3059
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
+0.4
-1.0
-3.4
-2.6
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
+0.2
-0.1
-3.5
-2.6
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.1
+0.3
-4.1
-2.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.2
-0.2
-3.4
-2.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.2
+0.4
-3.1
-3.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.1
-0.3
-3.2
-2.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
+0.3
+0.3
-3.8
-2.5
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.0
+0.8
-3.9
-2.5
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.1
+0.5
-4.4
-1.8
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.1
+0.3
-3.9
-1.9
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.1
+0.3
-4.6
-1.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.1
+0.1
-3.7
-1.9
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.2
+0.6
-3.9
-2.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.0
+0.6
-4.1
-1.6
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
+0.1
+0.1
-3.0
-2.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
+0.2
+0.6
-3.7
-2.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
-0.0
+0.2
-3.4
-1.8
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
+0.1
+0.3
-3.0
-2.1
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