Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3054 and GFF3055 are separated by 13 nucleotidesGFF3055 and GFF3056 are separated by 63 nucleotidesGFF3056 and GFF3057 are separated by 110 nucleotidesGFF3057 and GFF3058 are separated by 26 nucleotides GFF3054 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 488,022 to 489,374 GFF3054 GFF3055 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 489,388 to 489,882 GFF3055 GFF3056 - Nitrogen assimilation regulatory protein Nac, at 489,946 to 490,917 GFF3056 GFF3057 - Aspartate aminotransferase (EC 2.6.1.1), at 491,028 to 492,242 GFF3057 GFF3058 - Demethylmenaquinone methyltransferase-like protein, at 492,269 to 492,940 GFF3058
Group Condition GFF3054 GFF3055 GFF3056 GFF3057 GFF3058
complex community Community=arabino-guar; Passage=4 -0.9 N.D. -0.5 +0.5 -1.2
complex community Community=guar; Passage=4 +0.0 N.D. -0.2 -0.2 -0.4
no phage control no phage control -0.2 N.D. -0.1 +0.1 -0.3
complex community Community=Locust bean gum; Passage=4 +0.4 N.D. -0.1 -0.2 -0.6
complex community Community=arabino-guar; Passage=4 +0.5 N.D. +0.2 -0.1 -0.9
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.1 N.D. -0.4 -0.2 +0.4
complex community Community=arabino-guar; Passage=4 -1.0 N.D. +0.4 +0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 N.D. -0.4 +0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.4 N.D. -0.1 +0.2 +0.1
phage phage_bap4 -0.3 N.D. +0.1 +0.1 +0.2
complex community Community=Kojac gum; Passage=1 -0.4 N.D. +0.3 +0.1 +0.2
complex community Community=guar; Passage=4 -0.8 N.D. -0.2 +0.5 +0.5
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 N.D. -0.3 -0.1 +0.5
complex community Community=Locust bean gum; Passage=4 -0.6 N.D. +0.3 +0.1 +0.4
phage phage_bap4 -0.3 N.D. +0.1 +0.2 +0.2
complex community Community=Kojac gum; Passage=4 -0.3 N.D. +0.3 -0.5 +0.8
phage phage_bap4 -0.2 N.D. +0.4 +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 N.D. -0.0 -0.1 +0.4
no phage control no phage control -0.2 N.D. +0.3 +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 N.D. -0.2 +0.1 +0.1
complex community Community=guar; Passage=4 +0.3 N.D. -0.2 -0.4 +0.7
complex community Community=Locust bean gum; Passage=4 -0.2 N.D. +0.4 +0.2 -0.0
complex community Community=arabino-guar; Passage=4 +0.0 N.D. +0.6 +0.2 -0.4
phage phage_bap4 -0.3 N.D. +0.4 +0.1 +0.2
complex community Community=Locust bean gum; Passage=4 +0.3 N.D. +0.2 -0.4 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.4 N.D. -0.1 -0.0 +0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 N.D. -0.1 +0.1 +0.7
phage phage_bap4 -0.5 N.D. +0.6 +0.0 +0.4
complex community Community=guar; Passage=4 -0.1 N.D. +0.2 -0.1 +0.8
phage phage_bap4 +0.2 N.D. +0.3 -0.0 +0.3
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