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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3053 and GFF3054 overlap by 4 nucleotides
GFF3054 and GFF3055 are separated by 48 nucleotides
GFF3055 and GFF3056 are separated by 225 nucleotides
GFF3056 and GFF3057 are separated by 27 nucleotides
GFF3053 - hypothetical protein, at 3,128,984 to 3,129,556
GFF3053
GFF3054 - hypothetical protein, at 3,129,553 to 3,129,909
GFF3054
GFF3055 - Fumarate hydratase class II (EC 4.2.1.2), at 3,129,958 to 3,131,343
GFF3055
GFF3056 - hypothetical protein, at 3,131,569 to 3,132,258
GFF3056
GFF3057 - ClpXP protease specificity-enhancing factor SspBalpha, at 3,132,286 to 3,132,762
GFF3057
Group
Condition
GFF3053
GFF3054
GFF3055
GFF3056
GFF3057
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.1
+0.1
+0.4
-1.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.1
+0.1
-0.1
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.1
-0.1
+0.0
+0.6
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.2
+0.0
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.1
-0.1
-0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.2
-0.2
+0.2
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.1
-0.0
+0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.4
-0.2
+0.1
+0.2
+0.6
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.0
+0.0
+0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.1
+0.1
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.1
+0.0
+0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.3
+0.2
-0.0
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.3
+0.1
+0.1
-0.2
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.0
+0.1
+0.3
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
+0.0
+0.2
+0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.1
+0.0
-0.0
+0.8
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.3
+0.1
+0.1
+0.5
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.2
+0.1
+0.2
+0.6
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