Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15595	PS417_15605	PS417_15610	PS417_15615	PS417_15620
carbon source	L-Valine (C)	N.D.	+0.2	-1.4	-0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-0.4	-0.4	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.1	-0.7	-0.2	-0.3
phage	P. simiae OR1 MOI 0.1	N.D.	-0.5	-0.8	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	+0.1	-0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.2	+0.1	-0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.1	-0.3	+0.2	-1.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.1	-0.9	-0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.3	+0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.5	-0.5	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.1	-0.8	+0.2	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	+0.2	+0.1	+0.1	-1.2
seeds	Growth on radish seeds for 72 hours	N.D.	-0.2	-0.9	+0.4	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.3	-0.7	-0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.6	-0.4	-0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.3	-0.6	+0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-0.6	-0.2	+0.2
carbon source	L-Glutamine (C)	N.D.	+0.3	-0.4	+0.2	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-0.4	+0.3	+0.3	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.1	+0.6	-0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	+0.6	-0.0	-0.3
carbon source	L-Lactate (C)	N.D.	-0.3	+0.6	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.4	+1.0	-0.2	-0.0
carbon source	L-Valine (C)	N.D.	-0.2	+0.6	+0.3	-0.3
soil	soil sample 4; outgrowth in LB	N.D.	-0.3	+0.8	+0.1	-0.2
stress	Gentamicin 0.008 mg/ml	N.D.	+0.1	+0.6	-0.1	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.3	+0.5	+0.4	-0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	+0.4	+0.4	-0.0	+0.4
phage	JP1 MOI 0.1	N.D.	-0.0	+0.6	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.5	+0.8	-0.2	+0.3