Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15585	PS417_15590	PS417_15595	PS417_15605	PS417_15610
motility	inner cut, LB soft agar motility assay	-1.1	-0.3	N.D.	-0.3	-0.2
seeds	Growth on radish seeds for 72 hours	-0.3	-0.6	N.D.	-0.2	-0.9
phage	P. simiae ORA MOI 1	-0.7	-0.6	N.D.	-0.3	-0.3
carbon source	Xylitol (C)	-0.5	-0.3	N.D.	-0.3	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2	-0.5	N.D.	-0.1	+0.4
phage	P. simiae Grant Run MOI 0.1	-0.8	-0.6	N.D.	+0.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-1.2	N.D.	+0.2	-0.3
carbon source	L-Valine (C)	-0.0	+0.1	N.D.	+0.2	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3	-0.6	N.D.	+0.1	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-1.1	+0.4	N.D.	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.4	N.D.	-0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	-0.2	N.D.	+0.1	+0.4
seeds	Growth on radish seeds for 72 hours	+0.8	-0.5	N.D.	-0.5	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	-0.5	N.D.	-0.4	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.6	N.D.	-0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+1.0	N.D.	-0.1	-0.7
phage	JP1 MOI 1	+1.1	-0.9	N.D.	+0.0	-0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.2	-0.9	N.D.	+0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.3	N.D.	-0.3	-0.7
phage	JP1 MOI 0.1	+0.9	-1.0	N.D.	-0.0	+0.6
phage	P. simiae OR1 MOI 0.1	+1.0	+0.8	N.D.	-0.5	-0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.3	-0.3	N.D.	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+1.0	N.D.	-0.4	-0.4
soil	soil sample 4; outgrowth in LB	+0.6	-0.1	N.D.	-0.3	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.4	N.D.	+0.5	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.9	N.D.	-0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	+0.0	N.D.	-0.1	+0.5
carbon source	L-Valine (C)	+0.9	+0.3	N.D.	-0.2	+0.6
stress	methylglyoxal 0.032 vol%	+0.2	+0.6	N.D.	+0.6	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.6	N.D.	+0.3	+0.5