Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_15575 and PS417_15580 are separated by 109 nucleotidesPS417_15580 and PS417_15585 overlap by 4 nucleotidesPS417_15585 and PS417_15590 are separated by 7 nucleotidesPS417_15590 and PS417_15595 overlap by 1 nucleotides PS417_15575: PS417_15575 - histidine kinase, at 3,412,786 to 3,414,498 _15575 PS417_15580: PS417_15580 - DNA polymerase, at 3,414,608 to 3,417,679 _15580 PS417_15585: PS417_15585 - DNA repair nucleotidyltransferase, at 3,417,676 to 3,419,088 _15585 PS417_15590: PS417_15590 - hypothetical protein, at 3,419,096 to 3,419,710 _15590 PS417_15595: PS417_15595 - LexA family transcriptional regulator, at 3,419,710 to 3,420,327 _15595
Group Condition PS417_15575 PS417_15580 PS417_15585 PS417_15590 PS417_15595
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 -0.0 -1.2 -0.5 N.D.
motility inner cut, LB soft agar motility assay -0.3 +0.1 -1.1 -0.3 N.D.
phage P. simiae ORA MOI 0.1 -0.2 -0.4 -0.5 -0.6 N.D.
phage P. simiae ORA MOI 1 -0.1 -0.2 -0.7 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -0.1 -0.6 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.1 -1.0 -0.2 N.D.
phage P. simiae Grant Run MOI 0.1 +0.1 +0.4 -0.8 -0.6 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.1 +0.4 -0.5 -0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.1 -0.2 -1.1 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.3 +0.6 -0.2 -0.6 N.D.
phage P. simiae OR Antrim MOI 0.1 +0.0 +0.4 -0.7 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.4 -0.4 +0.5 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.0 +0.5 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.2 -0.6 +0.1 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 +0.2 -0.7 +0.5 N.D.
phage JP1 MOI 0.1 +0.4 -0.3 +0.9 -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +0.1 +0.3 -0.6 N.D.
carbon source L-Valine (C) -0.5 -0.3 +0.9 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 +0.7 -0.2 +0.1 N.D.
phage JP1 MOI 1 +0.2 +0.0 +1.1 -0.9 N.D.
seeds Growth on radish seeds for 72 hours -0.2 +0.4 +0.8 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.4 +0.5 +0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +0.2 -0.1 +1.0 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.1 +1.3 -0.3 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 +0.6 +0.7 +0.2 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 -0.0 +0.6 +0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.5 +1.0 +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.2 -0.2 +1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.1 +0.7 +1.0 N.D.
phage P. simiae OR1 MOI 0.1 +0.1 -0.1 +1.0 +0.8 N.D.
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