Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_15545	PS417_15550	PS417_15555	PS417_15560	PS417_15565
soil	soil sample 8; outgrowth in LB	-0.2	+0.3	+0.1	-1.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.2	-0.5	-1.0	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	-0.1	-0.3	-0.7	-0.2
phage	P. simiae OR1 MOI 0.1	+0.1	+0.3	-0.7	-0.6	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.1	-0.6	-0.7	+0.4
soil	soil sample 7; outgrowth in LB	-0.2	-0.2	+0.3	-0.8	+0.2
stress	methylglyoxal 0.032 vol%	-0.1	-0.4	-0.3	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.7	-0.3	+0.3	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.1	-0.4	+0.5	-0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	-0.1	+0.4	-0.9	+0.4
soil	soil sample 3; outgrowth in LB	+0.1	+0.3	-0.6	-0.4	+0.3
soil	soil sample 6; outgrowth in LB	+0.2	+0.1	+0.1	-0.9	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.2	+0.6	-0.6	-0.0
phage	P. simiae OR Antrim MOI 1	+0.4	-0.2	-0.5	+0.3	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	-0.1	-0.6	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.2	+0.3	-0.3	-0.6	+0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	+0.3	-0.3	-0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.2	+0.4	-0.3	+0.4
root	root sample 6; outgrowth in LB	+0.2	-0.2	+0.1	-0.5	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.2	+0.1	+0.7	-0.2
seeds	Growth on radish seeds for 72 hours	+0.4	-0.3	+0.6	-0.2	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	+0.3	+0.1	-0.3	+0.2
seeds	Growth on radish seeds for 72 hours	-0.2	+0.0	+0.1	+0.9	+0.1
carbon source	L-Valine (C)	-0.4	+0.1	+0.4	+0.9	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.3	+0.1	+0.2	+0.7	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	+0.3	+0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.4	+0.4	+0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.4	-0.0	+0.9	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	+0.4	+0.1	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.0	+0.2	+1.7	+0.1