Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_15485 and PS417_15490 overlap by 4 nucleotidesPS417_15490 and PS417_15495 overlap by 4 nucleotidesPS417_15495 and PS417_15500 are separated by 128 nucleotidesPS417_15500 and PS417_15505 are separated by 134 nucleotides PS417_15485: PS417_15485 - amino acid ABC transporter permease, at 3,392,752 to 3,393,420 _15485 PS417_15490: PS417_15490 - glutamine ABC transporter ATP-binding protein, at 3,393,417 to 3,394,169 _15490 PS417_15495: PS417_15495 - FAD-dependent oxidoreductase, at 3,394,166 to 3,395,434 _15495 PS417_15500: PS417_15500 - membrane protein, at 3,395,563 to 3,396,330 _15500 PS417_15505: PS417_15505 - glutaminase, at 3,396,465 to 3,397,373 _15505
Group Condition PS417_15485 PS417_15490 PS417_15495 PS417_15500 PS417_15505
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.6 -4.7 -0.1 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.4 -2.7 +0.1 -0.0
root root sample 6; outgrowth in LB +0.3 -0.2 -3.2 +0.3 -0.0
carbon source L-Valine (C) -0.4 -0.0 -1.2 -0.1 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.3 -2.1 -0.1 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -0.8 -2.2 +0.0 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.2 -3.0 -0.3 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.5 -1.8 -0.5 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +0.2 -2.0 -0.2 -1.0
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 -0.6 -1.2 -0.4 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.1 -2.5 -0.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.5 -2.1 -0.1 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 -0.5 -2.0 -0.2 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.4 -2.0 +0.2 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.0 -2.3 -0.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.0 -2.5 -0.0 +0.3
soil soil sample 4; outgrowth in LB +0.3 -0.5 -2.2 -0.0 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +0.2 -2.5 +0.0 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.1 -1.9 -0.4 +0.1
motility inner cut, LB soft agar motility assay -0.1 -0.1 -1.9 -0.0 +0.3
rhizosphere rhizosphere sample 8; outgrowth in LB +0.5 -0.3 -1.8 -0.0 -0.1
motility inner cut, LB soft agar motility assay -0.2 +0.5 -1.8 -0.0 +0.1
motility outer cut, LB soft agar motility assay -0.1 +0.6 -1.6 -0.1 -0.0
phage JP1 MOI 10 +0.4 -0.5 +0.5 +0.4 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +1.1 -1.1 -0.4 +0.2
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.4 -0.3 +1.0 -0.4 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.8 +1.0 +0.1 -0.7
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 -0.4 -0.4 +0.2 +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 -0.6 +2.1 -0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 +0.5 +0.4 +0.0 +2.2
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