Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15470	PS417_15475	PS417_15480	PS417_15485	PS417_15490
soil	soil sample 3; outgrowth in LB	-0.4	+0.5	-3.1	-0.3	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.4	-0.0	-0.4	-0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	-0.5	-0.2	-0.4	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.5	-1.3	-0.0	-0.6
phage	P. simiae OR Antrim MOI 1	+0.0	-0.6	-2.0	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.3	-2.1	-0.3	+0.4
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.6	-0.3	-1.2	+0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.4	-1.7	+0.3	-0.2
phage	Wcs_1	+0.2	-1.1	-1.3	+0.1	+0.0
stress	Cisplatin 0.01 mg/ml	-1.1	-0.1	-0.9	+0.1	+0.3
carbon source	D-Sorbitol (C)	+0.2	-0.5	-1.2	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	-0.5	-1.2	-0.4	+0.6
phage	P. simiae ORA MOI 0.1	-0.5	-0.4	-1.0	+0.4	-0.0
stress	Doxycycline hyclate 0.001 mg/ml	-0.5	+0.7	-1.9	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.9	+0.2	-0.7	+0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.4	-1.5	+0.2	-0.2
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.3	-1.9	+0.2	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	-1.0	+0.7	-0.2	-0.1
soil	soil sample 4; outgrowth in LB	+0.4	+0.0	-1.2	+0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.7	+0.4	-2.2	+0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+0.3	+0.2	-0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.4	+0.5	-0.1	+0.5
agar plate interaction control	Taped volatile agar plate with no fungus	-1.1	+0.0	+1.3	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	+0.5	+0.9	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.0	+0.7	+0.2	+0.6	-0.4
stress	Gentamicin 0.008 mg/ml	+1.0	+0.7	-0.7	+0.5	+0.2
soil	soil sample 5; outgrowth in LB	+0.4	+0.3	+1.4	-0.2	-0.2
root	root sample 6; outgrowth in LB	-0.1	+1.0	+0.7	+0.3	-0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	+0.3	+0.5	+0.8	-0.3	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.3	-0.0	+0.9	+0.2	-0.1