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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3022 and GFF3023 are separated by 329 nucleotides
GFF3023 and GFF3024 overlap by 8 nucleotides
GFF3024 and GFF3025 overlap by 11 nucleotides
GFF3025 and GFF3026 are separated by 39 nucleotides
GFF3022 - Transcriptional regulator, LysR family, at 3,093,186 to 3,094,082
GFF3022
GFF3023 - CzcABC family efflux RND transporter, transmembrane protein, at 3,094,412 to 3,097,606
GFF3023
GFF3024 - RND efflux system, membrane fusion protein, at 3,097,599 to 3,098,804
GFF3024
GFF3025 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 3,098,794 to 3,100,200
GFF3025
GFF3026 - Oxidoreductase, at 3,100,240 to 3,100,986
GFF3026
Group
Condition
GFF3022
GFF3023
GFF3024
GFF3025
GFF3026
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.1
+0.1
-0.3
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
-0.1
-0.1
-0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.0
-0.1
-0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.1
-0.1
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.0
+0.0
-0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.1
-0.1
-0.0
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.1
+0.1
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.0
-0.0
-0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
+0.1
+0.1
-0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.0
-0.0
-0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.1
+0.1
-0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
+0.0
-0.0
-0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.1
+0.1
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.1
+0.1
+0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.0
-0.0
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.1
+0.0
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
+0.0
-0.0
+0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.0
+0.1
+0.1
+0.1
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