Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15460	PS417_15465	PS417_15470	PS417_15475	PS417_15480
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.6	-2.4	-0.0	-0.4
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.0	-0.8	-0.6	-0.3	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-1.3	-0.5	-1.1	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	-0.8	-0.7	-0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	-2.1	-0.5	-0.2
stress	Choline chloride 300 mM	-0.2	-1.5	-1.0	+0.2	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	-2.8	-0.5	-0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.1	-0.9	+0.4	-1.7
soil	soil sample 3; outgrowth in LB	-0.2	+0.7	-0.4	+0.5	-3.1
phage	P. simiae OR Antrim MOI 1	+0.0	+0.4	+0.0	-0.6	-2.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	-0.6	+0.7	+0.4	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.5	-0.6	+0.3	-2.1
stress	methylglyoxal 0.032 vol%	-0.1	-1.4	+0.5	+0.1	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.9	-0.2	+0.5	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.8	-0.5	+0.6	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.9	+0.1	+0.6	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-1.2	-0.5	-0.2	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.6	-1.8	+0.5	+0.9
phage	Wcs_1	+0.7	+0.2	+0.2	-1.1	-1.3
stress	Doxycycline hyclate 0.001 mg/ml	+0.5	+0.2	-0.5	+0.7	-1.9
nitrogen source	Inosine (N)	-0.7	-1.0	-0.3	+0.9	+0.2
phage	JP1 MOI 1	+0.7	-1.8	-0.3	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-1.4	-0.7	+0.3	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-1.2	-0.1	+0.5	+0.8
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-0.2	-1.1	+0.0	+1.3
phage	P. simiae OR Antrim MOI 1	+0.7	+1.0	+0.3	-0.7	+0.7
stress	Gentamicin 0.008 mg/ml	+0.2	+0.8	+1.0	+0.7	-0.7
soil	soil sample 5; outgrowth in LB	-0.1	+0.6	+0.4	+0.3	+1.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	+2.4	+1.5	-0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	+1.8	+1.3	-0.0	+0.9