Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3020 and GFF3021 are separated by 63 nucleotidesGFF3021 and GFF3022 overlap by 4 nucleotidesGFF3022 and GFF3023 are separated by 23 nucleotidesGFF3023 and GFF3024 are separated by 13 nucleotides GFF3020 - FIG00966904: hypothetical protein, at 449,515 to 449,904 GFF3020 GFF3021 - no description, at 449,968 to 450,150 GFF3021 GFF3022 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 450,147 to 451,199 GFF3022 GFF3023 - C4-dicarboxylate transport protein, at 451,223 to 452,497 GFF3023 GFF3024 - Aspartate racemase (EC 5.1.1.13), at 452,511 to 453,245 GFF3024
Group Condition GFF3020 GFF3021 GFF3022 GFF3023 GFF3024
complex community Community=arabino-guar; Passage=4 N.D. N.D. -1.3 -0.7 N.D.
complex community Community=guar; Passage=4 N.D. N.D. -1.1 -0.3 N.D.
complex community Community=arabino-guar; Passage=4 N.D. N.D. -0.7 -0.4 N.D.
complex community Community=arabino-guar; Passage=4 N.D. N.D. -0.5 -0.5 N.D.
complex community Community=Kojac gum; Passage=4 N.D. N.D. -0.7 -0.2 N.D.
complex community Community=arabino-guar; Passage=4 N.D. N.D. -1.0 +0.4 N.D.
no phage control no phage control N.D. N.D. -0.3 -0.3 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. -0.2 -0.3 N.D.
complex community Community=guar; Passage=4 N.D. N.D. -1.0 +0.5 N.D.
phage phage_bap4 N.D. N.D. -0.7 +0.2 N.D.
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. N.D. -0.3 -0.2 N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. -0.4 +0.0 N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. -0.5 +0.1 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. +0.2 -0.5 N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. N.D. +0.2 -0.4 N.D.
complex community Community=Locust bean gum; Passage=1 N.D. N.D. -0.5 +0.3 N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. N.D. +0.3 -0.5 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. N.D. +0.3 -0.4 N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. +0.3 -0.5 N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. -0.2 +0.2 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. N.D. +0.4 -0.3 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. +0.4 -0.3 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. N.D. +0.4 -0.2 N.D.
complex community Community=Locust bean gum; Passage=4 N.D. N.D. +0.4 -0.2 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. N.D. +0.4 -0.1 N.D.
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. N.D. +0.5 -0.1 N.D.
phage phage_bap4 N.D. N.D. +0.2 +0.3 N.D.
phage phage_bap4 N.D. N.D. +0.2 +0.4 N.D.
complex community Community=Locust bean gum; Passage=4 N.D. N.D. +1.1 -0.4 N.D.
complex community Community=Locust bean gum; Passage=4 N.D. N.D. +0.9 -0.2 N.D.
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