Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15435	PS417_15440	PS417_15445	PS417_15450	PS417_15455
solid stress	Fraxetin 3 mM; solid stress	-0.8	+0.1	-0.8	-0.5	-0.3
phage	P. simiae Grant Run MOI 0.1	-1.2	+0.1	-0.2	-0.3	-0.3
phage	P. simiae OR1 MOI 0.1	+0.4	-0.1	-0.5	-0.8	-0.7
phage	P. simiae Grant Run MOI 10	-0.7	-0.8	-0.2	-0.1	+0.2
solid stress	Fraxetin 2 mM; solid stress	-0.4	-0.3	-0.2	-1.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.3	+0.2	-0.1	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.0	+0.9	-0.1	-0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	-0.1	-1.3	+0.7
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.1	-0.5	+0.6	-0.4	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.5	+0.1	-0.8	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.1	+0.5	-0.1	-0.5
phage	JP1 MOI 1	-0.2	-0.5	-0.7	+0.2	+0.4
carbon source	L-Valine (C)	+1.1	+0.0	-0.4	-0.9	-0.5
stress	Paraquat dichloride 0.008 mg/ml	+0.4	-0.7	-0.1	+0.4	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	+0.9	-0.1	-0.5	+0.2
supernatant control	Vogels_fungal_media 0.1X	-0.1	+0.5	+0.3	-1.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	-0.4	-0.3	+0.6	+0.3
phage	Wcs_0.1	-1.0	+0.1	+0.4	+0.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.5	+0.8	-0.5	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.7	+0.1	+0.4	-0.4	-0.4
supernatant control	Vogels_fungal_media 0.1X	+0.5	-0.4	+0.7	-0.7	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.2	+0.3	+0.6	-0.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.6	+0.2	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.4	+0.2	+0.7	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	-0.4	+0.8	-0.1	-0.2
root	root sample 6; outgrowth in LB	-0.4	-0.2	-0.2	+1.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.4	+0.4	-0.1	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0	+0.9	+0.0	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+1.1	+1.8	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+1.8	+0.4	+0.2	+0.4