Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15425	PS417_15430	PS417_15435	PS417_15440	PS417_15445
phage	P. simiae Grant Run MOI 10	-0.0	+0.2	-0.7	-0.8	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	+0.1	-2.0	+0.9	-0.1
phage	P. simiae ORA MOI 1	+0.5	-0.1	-0.6	-0.6	+0.1
phage	P. simiae OR Antrim MOI 10	-1.1	+0.0	-0.3	+0.5	+0.2
no phage control	Time6-nophage	-0.5	-0.3	-0.5	+0.3	+0.4
soil	soil sample 3; outgrowth in LB	-0.6	-0.3	+0.8	+0.2	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.7	-0.5	+0.4	+0.7	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.1	-0.9	+0.9	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.1	-0.8	+0.6	+0.2
phage	P. simiae Grant Run MOI 10	-0.8	+0.1	+0.5	+0.3	-0.4
phage	Wcs_0.1	+0.4	+0.0	-1.0	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.1	-0.9	-0.1	+0.5
seeds	Growth on radish seeds for 24 hours	+0.9	-0.0	+0.2	-0.8	+0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.5	-0.3	+0.1	-0.5	+0.6
stress	Nalidixic 0.015 mg/ml	+0.6	+0.2	-0.7	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	+0.2	-0.4	-0.3	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	+0.0	-0.6	+0.6	+0.4
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.1	+0.5	-0.4	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-0.0	+0.2	+1.3	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.6	-0.3	-0.2	+0.3	+0.6
seeds	Growth on radish seeds for 72 hours	+1.1	-0.4	+0.1	+0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.1	+0.2	-0.5	+0.8
carbon source	L-Valine (C)	+0.4	+0.1	+1.1	+0.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.2	+0.7	-0.4	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.8	-0.2	+0.0	+0.4	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.6	-0.1	+0.7	+0.1	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.9	-0.1	+0.1	+0.6	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-0.2	+0.2	+1.8	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	-0.3	+1.0	+0.9	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	+0.1	+0.3	+1.1	+1.8