Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_15395	PS417_15400	PS417_15405	PS417_15410	PS417_15415
soil	soil sample 5; outgrowth in LB	-0.2	-1.8	-0.3	-0.6	-0.3
no phage control	Time6-nophage	-0.0	-1.8	-0.3	-0.2	-0.3
seeds	Growth on radish seeds for 72 hours	-0.5	-1.1	-0.2	-0.1	-0.3
soil	soil sample 2; outgrowth in LB	-0.0	-1.4	-0.2	+0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.6	-0.7	+0.2	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.7	-0.1	-1.3	+0.3
phage	JP1 MOI 10	-0.0	-1.3	-0.3	-0.6	+0.8
stress	Polymyxin B sulfate 0.006 mg/ml	-0.0	-1.3	-0.3	+0.3	-0.2
phage	JP1 MOI 1	+0.1	-1.1	+0.0	-0.5	+0.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	-1.5	+0.2	-0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.1	-0.7	-0.6	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.1	-1.2	+0.3	-0.4	+0.3
phage	JP1 MOI 0.1	-0.2	-1.2	-0.0	-0.1	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	-0.9	+0.3	-0.6	+0.3
motility	outer cut, LB soft agar motility assay	+0.2	-1.2	-0.2	+0.4	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-1.0	+0.0	-0.3	+0.7
supernatant control	Vogels_fungal_media 0.1X	+0.1	-0.9	-0.3	+0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.9	-0.3	+0.9	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+1.2	-0.2	-0.4	-0.0
ecofab	LB 0.5x in EcoFAB_3.5mL	-0.2	+0.6	-0.1	+0.7	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.4	-0.4	+0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.5	+0.1	+1.0	-0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.1	+1.4	+0.3	+0.4	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+1.5	-0.5	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+1.0	-0.1	-0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+1.5	-0.2	+0.0	+0.0
stress	Gentamicin 0.008 mg/ml	+0.2	+1.4	+0.5	+0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6	+0.5	+0.5	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.9	-0.1	+0.1	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.0	-0.3	+1.9	+0.3