Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_15390	PS417_15395	PS417_15400	PS417_15405	PS417_15410
soil	soil sample 5; outgrowth in LB	+0.1	-0.2	-1.8	-0.3	-0.6
no phage control	Time6-nophage	-0.5	-0.0	-1.8	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.2	+0.1	-0.7	-0.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.9	+0.2	-1.5	+0.2	-0.3
stress	Neomycin 0.04 mg/ml	-1.2	-0.4	-0.4	-0.1	-0.1
phage	JP1 MOI 10	+0.0	-0.0	-1.3	-0.3	-0.6
stress	methylglyoxal 0.032 vol%	-1.2	-0.7	+0.3	-0.0	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.3	-0.7	-0.1	-1.3
stress	Tetracycline 0.001 mg/ml	-1.6	-0.4	+0.3	-0.1	+0.1
nophagecontrol	Only library	-1.2	+0.4	-0.3	+0.2	-0.6
supernatant control	Vogels_fungal_media 0.1X	-0.5	+0.1	-0.9	-0.3	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.4	+0.1	-1.2	+0.3	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.3	+0.3	+0.4	-0.4	+0.6
seeds	Growth on radish seeds for 72 hours	-1.0	-0.2	-0.1	+0.7	+0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.6	-0.3	-1.0	+0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.5	-0.9	-0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	-0.0	-1.1	-0.1	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.4	-0.4	+0.5	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	+0.1	-1.1	+0.4	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	+1.2	-0.2	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.8	+0.0	+1.0	-0.3	+0.1
stress	Nalidixic 0.015 mg/ml	-1.0	-0.2	+0.9	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.5	-0.2	-0.4	-0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.3	-0.0	-0.6	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.0	-0.0	-0.3	+1.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.2	+1.5	-0.2	+0.0
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.6	-0.1	+1.4	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.5	+1.5	-0.5	+0.1
stress	Gentamicin 0.008 mg/ml	-0.5	+0.2	+1.4	+0.5	+0.1
stress	R2A with Fusaric 120 ug/mL	+0.5	-0.3	+1.1	+0.4	+0.1