Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_15360	PS417_15365	PS417_15370	PS417_15375	PS417_15380
root	root sample 6; outgrowth in LB	-0.0	-1.5	+0.2	+0.1	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.4	-1.3	-0.2	-1.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-1.0	-0.8	-0.5	-0.2
seeds	Growth on radish seeds for 24 hours	-0.2	-1.3	-0.6	+0.3	-0.3
seeds	Growth on radish seeds for 72 hours	-0.3	-1.4	+0.2	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.3	-0.5	+0.2	-1.3
soil	soil sample 3; outgrowth in LB	-0.1	-0.7	+0.5	-0.0	-1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.6	-0.8	-0.4	+0.3
phage	P. simiae Grant Run MOI 10	-0.1	-1.0	-0.7	+0.5	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.2	-0.7	-0.3	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.1	+0.7	-0.3	-1.8
carbon source	D-Glucosamine Hydrochloride (C)	+0.4	+0.2	-0.1	+0.2	-1.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.6	-0.8	+1.0	-0.4
soil	soil sample 8; outgrowth in LB	+0.0	-0.8	+0.7	+0.0	-0.9
phage	P. simiae ORA MOI 0.1	-0.1	-0.9	-0.2	-0.5	+0.7
soil	soil sample 5; outgrowth in LB	+0.4	-0.4	+0.4	-0.6	-0.7
nitrogen source	Cytidine (N)	+0.7	-0.3	-0.5	-0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	-0.5	+0.4	-0.9
solid stress	Fraxetin 3 mM; solid stress	+0.3	-0.0	-1.1	-0.4	+0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.2	-0.5	+0.7	+0.2	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.0	+0.1	+0.4	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.3	-0.1	+0.7	-0.6
stress	Neomycin 0.04 mg/ml	+0.2	+0.6	+0.4	+0.1	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.0	-0.1	-0.5	-0.5	-0.3
carbon source	L-Valine (C)	+0.6	-0.4	+0.4	-0.1	-0.7
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.4	+0.2	-0.7	+0.5
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	+0.8	+0.7	-0.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.2	+1.2	-0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.9	-0.9	+1.8	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	+0.6	+0.7	-0.3	+0.5