Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15320	PS417_15325	PS417_15330	PS417_15335	PS417_15340
seeds	Growth on radish seeds for 24 hours	+0.2	-2.5	-0.4	-1.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-3.0	-0.3	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.1	-0.4	-1.4	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.6	-0.3	-1.1	-0.2
seeds	Growth on radish seeds for 72 hours	+0.6	-1.5	-0.3	-0.4	-0.2
stress	Gentamicin 0.008 mg/ml	+0.1	-1.6	-0.0	+0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.2	-0.6	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-1.1	-0.3	+0.6	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.2	-1.0	+0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-1.6	-0.3	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-1.1	-0.5	+0.9	-0.3
soil	soil sample 5; outgrowth in LB	-0.1	-1.3	+0.2	+1.5	-0.5
soil	soil sample 7; outgrowth in LB	+0.1	-2.0	-0.1	+1.3	+0.5
phage	JP1 MOI 10	+0.2	-1.2	+0.1	+0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+1.0	-0.1	+0.1	-0.6
phage	P. simiae Grant Run MOI 0.1	-0.1	+0.8	-0.6	+0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+1.4	-0.3	-0.4	+0.0
soil	soil sample 3; outgrowth in LB	+0.1	-1.1	-0.0	+1.0	+0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.3	-1.3	-0.2	+2.2	-0.4
phage	P. simiae OR1 MOI 0.1	-0.1	+1.3	-1.4	+0.3	+0.6
soil	soil sample 8; outgrowth in LB	+0.1	-0.9	+0.2	+1.2	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.7	+0.4	+0.2	+0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	+0.1	-0.4	+1.9	-0.3
soil	soil sample 4; outgrowth in LB	-0.1	-0.0	-0.6	+1.3	+0.7
root	root sample 6; outgrowth in LB	-0.5	-0.3	-0.3	+2.4	+0.2
soil	soil sample 2; outgrowth in LB	-0.1	-0.3	+0.3	+1.3	+0.4
phage	P. simiae ORA MOI 0.1	+0.3	+1.1	+0.6	-0.4	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+1.5	-0.2	-0.0	+0.6
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.2	+0.9	-0.0	+2.0	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+2.2	-0.1	+1.5	+0.4