Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15310	PS417_15315	PS417_15320	PS417_15325	PS417_15330
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	N.D.	-0.0	-3.0	-0.3
seeds	Growth on radish seeds for 24 hours	+0.0	N.D.	+0.2	-2.5	-0.4
soil	soil sample 7; outgrowth in LB	+0.1	N.D.	+0.1	-2.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	+0.2	-1.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	N.D.	+0.3	-1.6	-0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.2	N.D.	-0.2	-1.7	+0.3
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	-0.0	N.D.	-0.1	-1.3	-0.3
stress	nitrate 200 mM	-0.3	N.D.	-0.1	-0.4	-0.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	N.D.	-0.3	-1.0	-0.3
stress	L-Lysine 60 mM	+0.1	N.D.	-0.0	-1.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-0.5	-0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	N.D.	+0.2	-1.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	N.D.	+0.1	-0.9	-0.3
liquid stress	Scopoletin 3 mM; liquid stress	+0.1	N.D.	-0.1	-1.5	+0.0
carbon source	Carbon source L-Citrulline 5 mM	-0.0	N.D.	+0.0	-1.5	+0.1
soil	soil sample 5; outgrowth in LB	+0.0	N.D.	-0.1	-1.3	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.0	N.D.	+0.3	-1.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	N.D.	-0.4	+0.2	-1.0
seeds	Growth on radish seeds for 72 hours	-0.0	N.D.	+0.6	-1.5	-0.3
solid stress	80% Methanol 3 mM; solid stress	+0.1	N.D.	-0.1	-1.3	+0.2
stress	Gentamicin 0.008 mg/ml	+0.5	N.D.	+0.1	-1.6	-0.0
phage	JP1 MOI 10	+0.1	N.D.	+0.2	-1.2	+0.1
phage	P. simiae OR1 MOI 0.1	-0.0	N.D.	-0.1	+1.3	-1.4
phage	P. simiae Grant Run MOI 0.1	-0.2	N.D.	-0.1	+0.8	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-0.5	+1.0	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	N.D.	+0.7	-0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	N.D.	-0.2	+1.4	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	N.D.	+0.0	+1.5	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	N.D.	+0.2	+2.2	-0.1
phage	P. simiae ORA MOI 0.1	+0.2	N.D.	+0.3	+1.1	+0.6