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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2985 and GFF2986 are separated by 4 nucleotides
GFF2986 and GFF2987 are separated by 30 nucleotides
GFF2987 and GFF2988 are separated by 177 nucleotides
GFF2988 and GFF2989 are separated by 8 nucleotides
GFF2985 - BUG/TctC family periplasmic protein, at 415,595 to 416,572
GFF2985
GFF2986 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 416,577 to 417,674
GFF2986
GFF2987 - CBS domain protein, at 417,705 to 418,157
GFF2987
GFF2988 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 418,335 to 419,639
GFF2988
GFF2989 - hypothetical protein, at 419,648 to 421,054
GFF2989
Group
Condition
GFF2985
GFF2986
GFF2987
GFF2988
GFF2989
complex community
Community=guar; Passage=4
-0.3
+0.1
-3.8
+0.1
-0.2
complex community
Community=Kojac gum; Passage=4
-0.1
+0.3
-3.9
-0.6
+0.1
complex community
Community=guar; Passage=4
+0.1
-0.2
-3.4
-0.3
-0.3
complex community
Community=arabino-guar; Passage=4
+0.7
-0.1
-2.7
-0.7
-0.7
complex community
Community=guar; Passage=4
+0.3
-0.2
-3.0
+0.1
-0.4
complex community
Community=arabino-guar; Passage=4
+0.3
+0.1
-3.2
-0.5
+0.2
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.2
-2.7
-0.4
+0.2
complex community
Community=arabino-guar; Passage=4
-0.5
+0.2
-2.0
-0.3
+0.2
complex community
Community=Locust bean gum; Passage=4
+0.1
+0.2
-2.6
+0.3
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.2
-2.9
+0.5
-0.0
complex community
Community=guar; Passage=4
+0.1
-0.0
-1.9
+0.1
-0.0
complex community
Community=arabino-guar; Passage=4
+0.4
-0.0
-1.3
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
-0.1
-1.2
+0.2
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.1
-0.3
-0.5
+0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.0
-0.7
-0.0
-0.1
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.4
-1.2
+0.5
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
+0.1
-1.0
+0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
+0.2
-0.8
+0.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.0
-0.7
-0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.3
+0.0
-0.6
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.0
-0.7
+0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.1
-0.6
+0.2
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.0
-0.7
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.1
-0.7
+0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
-0.0
-0.6
+0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.0
-0.6
+0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.0
-0.7
+0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.1
-0.6
+0.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
+0.0
-0.3
-0.1
+0.3
phage
phage_bap4
-0.2
+0.2
-0.2
-0.2
+0.2
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