Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_15275	PS417_15280	PS417_15285	PS417_15290	PS417_15295
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.2	-5.3	-0.0	-0.1
phage	P. simiae OR1 MOI 0.1	+0.4	-0.7	-5.0	-0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.5	-3.5	-0.1	+0.2
seeds	Growth on radish seeds for 72 hours	+0.4	-0.5	-3.2	+0.6	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-0.3	-0.2	-1.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.1	-2.4	+0.0	-0.5
phage moi 100	Time6-phageFRS	-0.5	+0.0	-2.3	+0.5	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.7	-1.8	-0.0	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.1	+0.2	-2.4	-0.1	+0.2
phage	P. simiae OR Antrim MOI 10	-0.1	-0.2	-1.8	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	-0.1	-1.4	+0.6	-0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.1	+0.0	-2.1	+0.6	-0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.6	-0.3	-1.9	+0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.4	-1.7	+0.3	-0.0
phage	P. simiae OR Antrim MOI 0.1	+0.4	-0.0	-1.3	-0.9	+0.6
stress	methylglyoxal 0.032 vol%	-1.0	+0.7	-0.7	+0.0	-0.2
soil	soil sample 5; outgrowth in LB	+0.5	-0.9	-0.4	-0.7	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.3	-1.4	-0.5	+0.4
phage	P. simiae ORA MOI 1	+0.3	+0.2	-1.7	+0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.7	+0.3	-1.4	-0.1	-0.2
phage	P. simiae Grant Run MOI 0.1	+0.6	-0.3	-1.1	+0.1	+0.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	+0.2	+0.9	+0.6	-0.9
phage	JP1 MOI 0.1	-0.3	-0.0	+1.3	+0.4	-0.6
seeds	Growth on radish seeds for 72 hours	+1.0	+0.0	-0.5	+0.7	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.2	+0.6	+1.8	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	-0.6	+0.8	+0.8	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.4	+2.3	+1.2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+4.1	-0.5	-0.8	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	+1.3	-0.4	+1.6	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5	+4.1	+0.1	+0.1	-0.1